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Mutant Information

Mutant Name	FN1695-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1695-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39098729 A-C Hetero INTERGENIC
SBS Chr1 39976214 T-C Hetero INTERGENIC
SBS Chr2 7982067 C-T Homo INTERGENIC
SBS Chr3 6245007 T-G Homo INTRON
SBS Chr3 25775769 A-T Homo INTERGENIC
SBS Chr3 25775770 C-T Homo INTERGENIC
SBS Chr3 27717934 A-T Hetero INTRON
SBS Chr4 7845287 G-A Homo INTERGENIC
SBS Chr5 19065142 C-T Hetero INTRON
SBS Chr6 12189627 G-A Homo INTERGENIC
SBS Chr6 21474556 T-A Homo INTERGENIC
SBS Chr7 2770313 G-A Homo INTERGENIC
SBS Chr7 19731515 C-A Homo INTERGENIC
SBS Chr8 6702699 G-A Hetero INTERGENIC
SBS Chr8 18112720 G-A Homo INTERGENIC
SBS Chr9 7135507 C-T Homo INTERGENIC
SBS Chr9 13839667 A-T Hetero UTR_3_PRIME
SBS Chr9 15418674 T-A Hetero INTERGENIC
SBS Chr10 18986871 C-T Hetero INTERGENIC
SBS Chr12 10947115 G-A Homo UTR_3_PRIME

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1362737 1362738 1
Deletion Chr11 5435241 5435245 4
Deletion Chr1 11624702 11624703 1
Deletion Chr6 13098728 13098735 7
Deletion Chr8 13490546 13490548 2
Deletion Chr12 20979491 20979495 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4060072 4060076 3
Insertion Chr4 31965684 31965686 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2609803 Chr3 3499371

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39098729	A-C	Hetero	INTERGENIC
SBS	Chr1	39976214	T-C	Hetero	INTERGENIC
SBS	Chr2	7982067	C-T	Homo	INTERGENIC
SBS	Chr3	6245007	T-G	Homo	INTRON
SBS	Chr3	25775769	A-T	Homo	INTERGENIC
SBS	Chr3	25775770	C-T	Homo	INTERGENIC
SBS	Chr3	27717934	A-T	Hetero	INTRON
SBS	Chr4	7845287	G-A	Homo	INTERGENIC
SBS	Chr5	19065142	C-T	Hetero	INTRON
SBS	Chr6	12189627	G-A	Homo	INTERGENIC
SBS	Chr6	21474556	T-A	Homo	INTERGENIC
SBS	Chr7	2770313	G-A	Homo	INTERGENIC
SBS	Chr7	19731515	C-A	Homo	INTERGENIC
SBS	Chr8	6702699	G-A	Hetero	INTERGENIC
SBS	Chr8	18112720	G-A	Homo	INTERGENIC
SBS	Chr9	7135507	C-T	Homo	INTERGENIC
SBS	Chr9	13839667	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	15418674	T-A	Hetero	INTERGENIC
SBS	Chr10	18986871	C-T	Hetero	INTERGENIC
SBS	Chr12	10947115	G-A	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1362737	1362738	1
Deletion	Chr11	5435241	5435245	4
Deletion	Chr1	11624702	11624703	1
Deletion	Chr6	13098728	13098735	7
Deletion	Chr8	13490546	13490548	2
Deletion	Chr12	20979491	20979495	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2609803	Chr3	3499371

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes