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Mutant Information

Mutant Name	FN1696-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1696-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3329694 T-A Homo INTRON
SBS Chr1 7723042 T-C Hetero INTERGENIC
SBS Chr1 10039228 T-G Hetero INTRON
SBS Chr1 10832637 G-A Homo INTERGENIC
SBS Chr1 13281037 C-T Homo INTERGENIC
SBS Chr1 24579206 T-G Hetero INTRON
SBS Chr1 40332358 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g437800
SBS Chr2 8186420 T-A Homo INTERGENIC
SBS Chr2 23084694 G-A Hetero STOP_GAINED OsKitaake02g225900
SBS Chr2 23084695 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g225900
SBS Chr2 31972297 C-T Homo INTERGENIC
SBS Chr2 31972298 C-T Homo INTERGENIC
SBS Chr3 17301655 T-A Hetero INTERGENIC
SBS Chr4 18549774 C-T Hetero INTERGENIC
SBS Chr4 36349098 G-A Hetero INTRON
SBS Chr5 16341153 C-T Hetero INTRON
SBS Chr6 15025833 G-A Hetero INTERGENIC
SBS Chr7 8859427 T-G Homo INTERGENIC
SBS Chr7 11124612 C-T Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr10 775726 T-C Hetero INTERGENIC
SBS Chr10 3255742 C-A Hetero INTERGENIC
SBS Chr10 8036845 C-T Hetero INTERGENIC
SBS Chr10 15057419 A-T Homo INTERGENIC
SBS Chr11 8526635 G-T Hetero INTERGENIC
SBS Chr12 13827938 A-G Homo INTRON
SBS Chr12 19878516 T-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2005666 2005668 2 OsKitaake02g030400
Deletion Chr1 2794999 2795003 4
Deletion Chr7 9154383 9154392 9
Deletion Chr4 14068001 14192000 123999 7
Deletion Chr4 15896001 15916000 19999 2
Deletion Chr11 20334511 20334516 5
Deletion Chr12 25381641 25381642 1
Deletion Chr4 26831243 26831245 2 OsKitaake04g194200
Deletion Chr1 42571783 42571784 1 OsKitaake01g468800

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15883773 15883776 2
Insertion Chr6 104511 104513 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 11834923 Chr1 19342532
Translocation Chr12 25290665 Chr7 12410527
Translocation Chr12 25291018 Chr7 12410519

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3329694	T-A	Homo	INTRON
SBS	Chr1	7723042	T-C	Hetero	INTERGENIC
SBS	Chr1	10039228	T-G	Hetero	INTRON
SBS	Chr1	10832637	G-A	Homo	INTERGENIC
SBS	Chr1	13281037	C-T	Homo	INTERGENIC
SBS	Chr1	24579206	T-G	Hetero	INTRON
SBS	Chr1	40332358	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g437800
SBS	Chr2	8186420	T-A	Homo	INTERGENIC
SBS	Chr2	23084694	G-A	Hetero	STOP_GAINED	OsKitaake02g225900
SBS	Chr2	23084695	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g225900
SBS	Chr2	31972297	C-T	Homo	INTERGENIC
SBS	Chr2	31972298	C-T	Homo	INTERGENIC
SBS	Chr3	17301655	T-A	Hetero	INTERGENIC
SBS	Chr4	18549774	C-T	Hetero	INTERGENIC
SBS	Chr4	36349098	G-A	Hetero	INTRON
SBS	Chr5	16341153	C-T	Hetero	INTRON
SBS	Chr6	15025833	G-A	Hetero	INTERGENIC
SBS	Chr7	8859427	T-G	Homo	INTERGENIC
SBS	Chr7	11124612	C-T	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr10	775726	T-C	Hetero	INTERGENIC
SBS	Chr10	3255742	C-A	Hetero	INTERGENIC
SBS	Chr10	8036845	C-T	Hetero	INTERGENIC
SBS	Chr10	15057419	A-T	Homo	INTERGENIC
SBS	Chr11	8526635	G-T	Hetero	INTERGENIC
SBS	Chr12	13827938	A-G	Homo	INTRON
SBS	Chr12	19878516	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2005666	2005668	2	OsKitaake02g030400
Deletion	Chr1	2794999	2795003	4
Deletion	Chr7	9154383	9154392	9
Deletion	Chr4	14068001	14192000	123999	7
Deletion	Chr4	15896001	15916000	19999	2
Deletion	Chr11	20334511	20334516	5
Deletion	Chr12	25381641	25381642	1
Deletion	Chr4	26831243	26831245	2	OsKitaake04g194200
Deletion	Chr1	42571783	42571784	1	OsKitaake01g468800

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11834923	Chr1	19342532
Translocation	Chr12	25290665	Chr7	12410527
Translocation	Chr12	25291018	Chr7	12410519

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes