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Mutant Information

Mutant Name	FN1697-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1697-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3855023 A-G Hetero INTERGENIC
SBS Chr1 11568086 A-T Hetero INTERGENIC
SBS Chr1 15611515 T-A Hetero INTERGENIC
SBS Chr1 16444666 A-T Hetero INTERGENIC
SBS Chr1 22099733 A-T Hetero INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 7992702 G-T Hetero INTERGENIC
SBS Chr2 16341955 A-T Hetero INTERGENIC
SBS Chr2 16693400 T-C Hetero INTERGENIC
SBS Chr2 21079990 T-C Hetero INTERGENIC
SBS Chr2 22728620 A-T Hetero INTERGENIC
SBS Chr2 32346833 A-C Hetero INTERGENIC
SBS Chr3 26096808 T-G Hetero INTERGENIC
SBS Chr3 31339936 G-A Hetero INTERGENIC
SBS Chr4 8437352 C-T Hetero INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 17430939 T-A Homo INTERGENIC
SBS Chr5 15467006 C-G Hetero INTERGENIC
SBS Chr6 162508 G-T Hetero INTRON
SBS Chr6 1541946 G-A Hetero INTRON
SBS Chr6 1541947 A-T Hetero INTRON
SBS Chr6 3168675 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 11581331 G-C Homo INTERGENIC
SBS Chr6 21666270 C-T Hetero INTERGENIC
SBS Chr6 22936447 A-T Hetero INTRON
SBS Chr7 8883306 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g093800
SBS Chr7 9255940 T-C Hetero INTERGENIC
SBS Chr7 10132457 C-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr8 11314598 C-T Hetero INTERGENIC
SBS Chr8 13112793 G-A Hetero UTR_3_PRIME
SBS Chr8 16079885 C-T Hetero INTRON
SBS Chr8 20492046 C-G Hetero INTERGENIC
SBS Chr8 24305008 A-G Hetero INTERGENIC
SBS Chr8 28253218 G-A Hetero INTRON
SBS Chr8 29068258 A-C Hetero INTERGENIC
SBS Chr9 2134648 C-T Hetero INTERGENIC
SBS Chr9 2135994 A-C Hetero INTERGENIC
SBS Chr9 12532977 A-T Homo INTERGENIC
SBS Chr9 14726226 G-A Hetero INTERGENIC
SBS Chr10 5813553 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr11 4319975 G-A Hetero INTERGENIC
SBS Chr11 15931647 G-C Hetero INTRON
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 15032946 T-G Hetero INTRON
SBS Chr12 18928750 G-T Hetero INTRON
SBS Chr12 18928751 G-T Hetero INTRON
SBS Chr12 18928752 C-T Hetero INTRON
SBS Chr12 19062263 A-T Hetero INTRON
SBS Chr12 20039078 A-C Hetero INTERGENIC
SBS Chr12 25027498 T-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3318720 3318722 2
Deletion Chr4 15173001 15180000 6999 OsKitaake04g072900
Deletion Chr9 15374001 15398000 23999 OsKitaake09g108200
Deletion Chr6 23683539 23683541 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2837653 2837656 2
Insertion Chr8 25883556 25883559 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 15746655 16261123
Inversion Chr11 15746661 16261131

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3075547 Chr9 2120916
Translocation Chr12 3076248 Chr9 2120905

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3855023	A-G	Hetero	INTERGENIC
SBS	Chr1	11568086	A-T	Hetero	INTERGENIC
SBS	Chr1	15611515	T-A	Hetero	INTERGENIC
SBS	Chr1	16444666	A-T	Hetero	INTERGENIC
SBS	Chr1	22099733	A-T	Hetero	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	7992702	G-T	Hetero	INTERGENIC
SBS	Chr2	16341955	A-T	Hetero	INTERGENIC
SBS	Chr2	16693400	T-C	Hetero	INTERGENIC
SBS	Chr2	21079990	T-C	Hetero	INTERGENIC
SBS	Chr2	22728620	A-T	Hetero	INTERGENIC
SBS	Chr2	32346833	A-C	Hetero	INTERGENIC
SBS	Chr3	26096808	T-G	Hetero	INTERGENIC
SBS	Chr3	31339936	G-A	Hetero	INTERGENIC
SBS	Chr4	8437352	C-T	Hetero	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	17430939	T-A	Homo	INTERGENIC
SBS	Chr5	15467006	C-G	Hetero	INTERGENIC
SBS	Chr6	162508	G-T	Hetero	INTRON
SBS	Chr6	1541946	G-A	Hetero	INTRON
SBS	Chr6	1541947	A-T	Hetero	INTRON
SBS	Chr6	3168675	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	11581331	G-C	Homo	INTERGENIC
SBS	Chr6	21666270	C-T	Hetero	INTERGENIC
SBS	Chr6	22936447	A-T	Hetero	INTRON
SBS	Chr7	8883306	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g093800
SBS	Chr7	9255940	T-C	Hetero	INTERGENIC
SBS	Chr7	10132457	C-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr8	11314598	C-T	Hetero	INTERGENIC
SBS	Chr8	13112793	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	16079885	C-T	Hetero	INTRON
SBS	Chr8	20492046	C-G	Hetero	INTERGENIC
SBS	Chr8	24305008	A-G	Hetero	INTERGENIC
SBS	Chr8	28253218	G-A	Hetero	INTRON
SBS	Chr8	29068258	A-C	Hetero	INTERGENIC
SBS	Chr9	2134648	C-T	Hetero	INTERGENIC
SBS	Chr9	2135994	A-C	Hetero	INTERGENIC
SBS	Chr9	12532977	A-T	Homo	INTERGENIC
SBS	Chr9	14726226	G-A	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr11	4319975	G-A	Hetero	INTERGENIC
SBS	Chr11	15931647	G-C	Hetero	INTRON
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	15032946	T-G	Hetero	INTRON
SBS	Chr12	18928750	G-T	Hetero	INTRON
SBS	Chr12	18928751	G-T	Hetero	INTRON
SBS	Chr12	18928752	C-T	Hetero	INTRON
SBS	Chr12	19062263	A-T	Hetero	INTRON
SBS	Chr12	20039078	A-C	Hetero	INTERGENIC
SBS	Chr12	25027498	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3318720	3318722	2
Deletion	Chr4	15173001	15180000	6999	OsKitaake04g072900
Deletion	Chr9	15374001	15398000	23999	OsKitaake09g108200
Deletion	Chr6	23683539	23683541	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15746655	16261123
Inversion	Chr11	15746661	16261131

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes