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Mutant Information

Mutant Name	FN1698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1698-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39916035 T-A Hetero INTERGENIC
SBS Chr2 9269509 C-T Homo INTERGENIC
SBS Chr2 24524416 C-A Hetero INTERGENIC
SBS Chr3 27208455 G-A Hetero INTERGENIC
SBS Chr3 33003726 G-A Hetero INTERGENIC
SBS Chr4 11258350 G-A Hetero INTERGENIC
SBS Chr4 34585299 A-G Hetero INTRON
SBS Chr5 23155632 G-A Homo INTERGENIC
SBS Chr6 20487835 A-C Homo INTRON
SBS Chr7 1431860 C-T Hetero INTERGENIC
SBS Chr8 17723536 A-G Hetero INTERGENIC
SBS Chr8 19996510 G-T Hetero INTERGENIC
SBS Chr9 810507 G-A Hetero INTERGENIC
SBS Chr10 5096178 G-A Homo INTERGENIC
SBS Chr10 7992424 G-A Hetero INTERGENIC
SBS Chr10 13472751 T-A Homo INTERGENIC
SBS Chr11 8886699 A-T Hetero INTERGENIC
SBS Chr11 19191012 C-A Homo INTERGENIC
SBS Chr11 20198149 G-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 60803 60804 1
Deletion Chr8 8059532 8059535 3
Deletion Chr7 10588587 10588588 1
Deletion Chr4 24908945 24908946 1
Deletion Chr7 26012138 26012140 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 8379070 8379074 3
Insertion Chr7 26359796 26359799 2
Insertion Chr3 20050183 20050185 1
Insertion Chr5 30215938 30215946 7

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11882572 12407848
Inversion Chr11 11882591 12407853
Inversion Chr9 17226880 17233862
Inversion Chr9 17226885 17233881
Inversion Chr11 21775924 21789261
Inversion Chr11 21775969 21789314

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39916035	T-A	Hetero	INTERGENIC
SBS	Chr2	9269509	C-T	Homo	INTERGENIC
SBS	Chr2	24524416	C-A	Hetero	INTERGENIC
SBS	Chr3	27208455	G-A	Hetero	INTERGENIC
SBS	Chr3	33003726	G-A	Hetero	INTERGENIC
SBS	Chr4	11258350	G-A	Hetero	INTERGENIC
SBS	Chr4	34585299	A-G	Hetero	INTRON
SBS	Chr5	23155632	G-A	Homo	INTERGENIC
SBS	Chr6	20487835	A-C	Homo	INTRON
SBS	Chr7	1431860	C-T	Hetero	INTERGENIC
SBS	Chr8	17723536	A-G	Hetero	INTERGENIC
SBS	Chr8	19996510	G-T	Hetero	INTERGENIC
SBS	Chr9	810507	G-A	Hetero	INTERGENIC
SBS	Chr10	5096178	G-A	Homo	INTERGENIC
SBS	Chr10	7992424	G-A	Hetero	INTERGENIC
SBS	Chr10	13472751	T-A	Homo	INTERGENIC
SBS	Chr11	8886699	A-T	Hetero	INTERGENIC
SBS	Chr11	19191012	C-A	Homo	INTERGENIC
SBS	Chr11	20198149	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	60803	60804	1
Deletion	Chr8	8059532	8059535	3
Deletion	Chr7	10588587	10588588	1
Deletion	Chr4	24908945	24908946	1
Deletion	Chr7	26012138	26012140	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11882572	12407848
Inversion	Chr11	11882591	12407853
Inversion	Chr9	17226880	17233862
Inversion	Chr9	17226885	17233881
Inversion	Chr11	21775924	21789261
Inversion	Chr11	21775969	21789314

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes