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Mutant Information 

Mutant NameFN1699-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN1699-S Alignment File
Seed Availability Yes [Order Seeds]
Phenotype
  • TO:0000326 (Leaf Color) = Normal
  • TO:0000137 (Days to heading) = Normal (Between 75% and 125%)
  • TO:0000346 (Tiller number) = Normal (Between 75% and 125%)
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file


Variant Information 

Single base substitutions: 6

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected
SBS  Chr140167535C-THeteroINTERGENIC
SBS  Chr223096081G-AHeteroINTERGENIC
SBS  Chr419219621A-CHomoINTRON
SBS  Chr914878868A-GHeteroINTERGENIC
SBS  Chr1021423162T-CHeteroINTERGENIC
SBS  Chr1218247607C-THeteroINTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Deletion  Chr7565800157230006499911
Deletion  Chr757260015745000189992
Deletion  Chr113688502136885042
Deletion  Chr920796300207963033

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes
Insertion  Chr828202694282026972OsKitaake08g237500 image

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes
Inversion  Chr7516118855008012