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Mutant Information

Mutant Name	FN1700-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1700-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3329171 A-T Hetero INTRON
SBS Chr1 21781206 G-A Homo INTERGENIC
SBS Chr1 43328869 C-T Homo INTRON
SBS Chr2 12394649 C-G Hetero INTERGENIC
SBS Chr3 5143698 C-T Hetero INTERGENIC
SBS Chr3 11570889 C-T Hetero INTERGENIC
SBS Chr3 16475547 A-C Homo INTERGENIC
SBS Chr3 34872546 T-C Homo INTERGENIC
SBS Chr5 13504918 A-G Homo INTERGENIC
SBS Chr5 19335925 A-G Hetero INTERGENIC
SBS Chr5 21405796 C-A Hetero INTERGENIC
SBS Chr5 26938676 T-G Hetero INTERGENIC
SBS Chr5 29381599 A-G Hetero INTERGENIC
SBS Chr6 14245839 T-C Hetero INTERGENIC
SBS Chr6 15897200 G-A Hetero INTERGENIC
SBS Chr6 16355540 G-A Hetero INTERGENIC
SBS Chr8 10149185 C-G Homo INTERGENIC
SBS Chr10 1104587 T-C Hetero INTERGENIC
SBS Chr11 10758659 C-A Homo INTERGENIC
SBS Chr12 8374918 G-A Homo INTERGENIC
SBS Chr12 24415023 G-A Hetero INTERGENIC
SBS Chr12 26652034 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1579081 1579086 5
Deletion Chr9 6879001 6895000 15999 2
Deletion Chr9 7107001 7811000 703999 22
Deletion Chr4 8345709 8345776 67
Deletion Chr8 12527514 12527516 2
Deletion Chr11 12750431 12750437 6
Deletion Chr6 13489915 13489918 3
Deletion Chr12 17787070 17787072 2
Deletion Chr1 19993451 19993464 13
Deletion Chr3 27994343 27994349 6
Deletion Chr5 30223346 30223347 1
Deletion Chr3 37752105 37752108 3

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18384687 18384692 4
Insertion Chr5 29295284 29295287 2
Insertion Chr9 855253 855256 2
Insertion Chr2 22105695 22105697 1
Insertion Chr2 35328984 35328987 2
Insertion Chr3 20028375 20028377 1
Insertion Chr12 11697894 11697897 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6007476 6878956
Inversion Chr9 6015817 6187780 OsKitaake09g036000
Inversion Chr9 6016494 6897298
Inversion Chr1 9084403 9156705
Inversion Chr1 9084405 9156718
Inversion Chr2 11939949 12731071
Inversion Chr2 11939954 12731082
Inversion Chr7 25431952 25441910 OsKitaake07g230700

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6007475 Chr8 24889618
Translocation Chr9 6015819 Chr8 24885917
Translocation Chr9 6895150 Chr5 18987939
Translocation Chr9 6895622 Chr5 18987934
Translocation Chr9 6895640 Chr3 8734256
Translocation Chr9 6897277 Chr3 8734354
Translocation Chr8 24885937 Chr7 25441909
Translocation Chr8 24889612 Chr7 25431946 OsKitaake07g230700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3329171	A-T	Hetero	INTRON
SBS	Chr1	21781206	G-A	Homo	INTERGENIC
SBS	Chr1	43328869	C-T	Homo	INTRON
SBS	Chr2	12394649	C-G	Hetero	INTERGENIC
SBS	Chr3	5143698	C-T	Hetero	INTERGENIC
SBS	Chr3	11570889	C-T	Hetero	INTERGENIC
SBS	Chr3	16475547	A-C	Homo	INTERGENIC
SBS	Chr3	34872546	T-C	Homo	INTERGENIC
SBS	Chr5	13504918	A-G	Homo	INTERGENIC
SBS	Chr5	19335925	A-G	Hetero	INTERGENIC
SBS	Chr5	21405796	C-A	Hetero	INTERGENIC
SBS	Chr5	26938676	T-G	Hetero	INTERGENIC
SBS	Chr5	29381599	A-G	Hetero	INTERGENIC
SBS	Chr6	14245839	T-C	Hetero	INTERGENIC
SBS	Chr6	15897200	G-A	Hetero	INTERGENIC
SBS	Chr6	16355540	G-A	Hetero	INTERGENIC
SBS	Chr8	10149185	C-G	Homo	INTERGENIC
SBS	Chr10	1104587	T-C	Hetero	INTERGENIC
SBS	Chr11	10758659	C-A	Homo	INTERGENIC
SBS	Chr12	8374918	G-A	Homo	INTERGENIC
SBS	Chr12	24415023	G-A	Hetero	INTERGENIC
SBS	Chr12	26652034	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1579081	1579086	5
Deletion	Chr9	6879001	6895000	15999	2
Deletion	Chr9	7107001	7811000	703999	22
Deletion	Chr4	8345709	8345776	67
Deletion	Chr8	12527514	12527516	2
Deletion	Chr11	12750431	12750437	6
Deletion	Chr6	13489915	13489918	3
Deletion	Chr12	17787070	17787072	2
Deletion	Chr1	19993451	19993464	13
Deletion	Chr3	27994343	27994349	6
Deletion	Chr5	30223346	30223347	1
Deletion	Chr3	37752105	37752108	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6007476	6878956
Inversion	Chr9	6015817	6187780	OsKitaake09g036000
Inversion	Chr9	6016494	6897298
Inversion	Chr1	9084403	9156705
Inversion	Chr1	9084405	9156718
Inversion	Chr2	11939949	12731071
Inversion	Chr2	11939954	12731082
Inversion	Chr7	25431952	25441910	OsKitaake07g230700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes