Search Kitaake

Mutant Information

Mutant Name	FN1701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1701-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5226243 G-T Hetero INTERGENIC
SBS Chr1 5554950 T-G Hetero INTERGENIC
SBS Chr1 5563200 T-A Hetero INTERGENIC
SBS Chr1 7900427 T-A Hetero INTERGENIC
SBS Chr2 4835120 G-C Hetero INTERGENIC
SBS Chr2 32251741 T-A Hetero INTERGENIC
SBS Chr3 4211816 G-A Hetero INTERGENIC
SBS Chr3 8728558 G-T Hetero INTERGENIC
SBS Chr4 11884863 G-A Homo INTERGENIC
SBS Chr4 12725442 G-A Homo INTERGENIC
SBS Chr5 12816416 G-T Homo INTERGENIC
SBS Chr6 14709155 G-A Hetero INTERGENIC
SBS Chr6 26464907 A-C Hetero INTRON
SBS Chr6 26484935 G-A Hetero INTERGENIC
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 11897173 G-A Hetero INTERGENIC
SBS Chr7 26962504 A-G Homo INTERGENIC
SBS Chr8 20047890 C-T Homo INTERGENIC
SBS Chr9 2313115 G-A Hetero INTERGENIC
SBS Chr11 6365137 G-A Hetero INTERGENIC
SBS Chr11 8516780 C-T Hetero INTERGENIC
SBS Chr11 9366684 A-G Hetero INTERGENIC
SBS Chr11 24627397 T-A Hetero INTRON
SBS Chr11 28972383 A-G Homo NON_SYNONYMOUS_CODING OsKitaake11g237000
SBS Chr12 13847743 G-A Hetero INTRON
SBS Chr12 14114842 C-A Homo INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 5285283 5285284 1
Deletion Chr3 8588001 8609000 20999 5
Deletion Chr11 10787711 10787821 110
Deletion Chr5 13049540 13049545 5
Deletion Chr6 18062001 18087000 24999

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7890858 7890863 4
Insertion Chr11 17484591 17484594 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 985908 1013180 2
Inversion Chr1 985922 1013191 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 12129443 Chr2 14521163 OsKitaake03g164200
Translocation Chr3 12129444 Chr2 14520870 OsKitaake03g164200
Translocation Chr3 12129446 Chr2 19110820 2
Translocation Chr6 18065086 Chr1 17580929 OsKitaake01g179600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5226243	G-T	Hetero	INTERGENIC
SBS	Chr1	5554950	T-G	Hetero	INTERGENIC
SBS	Chr1	5563200	T-A	Hetero	INTERGENIC
SBS	Chr1	7900427	T-A	Hetero	INTERGENIC
SBS	Chr2	4835120	G-C	Hetero	INTERGENIC
SBS	Chr2	32251741	T-A	Hetero	INTERGENIC
SBS	Chr3	4211816	G-A	Hetero	INTERGENIC
SBS	Chr3	8728558	G-T	Hetero	INTERGENIC
SBS	Chr4	11884863	G-A	Homo	INTERGENIC
SBS	Chr4	12725442	G-A	Homo	INTERGENIC
SBS	Chr5	12816416	G-T	Homo	INTERGENIC
SBS	Chr6	14709155	G-A	Hetero	INTERGENIC
SBS	Chr6	26464907	A-C	Hetero	INTRON
SBS	Chr6	26484935	G-A	Hetero	INTERGENIC
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	11897173	G-A	Hetero	INTERGENIC
SBS	Chr7	26962504	A-G	Homo	INTERGENIC
SBS	Chr8	20047890	C-T	Homo	INTERGENIC
SBS	Chr9	2313115	G-A	Hetero	INTERGENIC
SBS	Chr11	6365137	G-A	Hetero	INTERGENIC
SBS	Chr11	8516780	C-T	Hetero	INTERGENIC
SBS	Chr11	9366684	A-G	Hetero	INTERGENIC
SBS	Chr11	24627397	T-A	Hetero	INTRON
SBS	Chr11	28972383	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g237000
SBS	Chr12	13847743	G-A	Hetero	INTRON
SBS	Chr12	14114842	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	5285283	5285284	1
Deletion	Chr3	8588001	8609000	20999	5
Deletion	Chr11	10787711	10787821	110
Deletion	Chr5	13049540	13049545	5
Deletion	Chr6	18062001	18087000	24999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	985908	1013180	2
Inversion	Chr1	985922	1013191	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes