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Mutant Information

Mutant Name	FN1702-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1702-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1458065 T-A Homo UTR_5_PRIME
SBS Chr1 10615656 G-C Hetero INTERGENIC
SBS Chr1 13958671 T-G Hetero INTERGENIC
SBS Chr1 37550318 C-A Homo INTERGENIC
SBS Chr1 38035221 G-A Homo INTERGENIC
SBS Chr2 1105936 T-G Homo INTRON
SBS Chr2 6674102 T-C Homo INTERGENIC
SBS Chr2 18527737 C-T Hetero INTERGENIC
SBS Chr2 26397372 T-G Hetero INTRON
SBS Chr3 8429535 C-T Hetero INTERGENIC
SBS Chr3 8530398 C-T Hetero INTERGENIC
SBS Chr3 26153798 G-A Hetero INTERGENIC
SBS Chr4 14414186 C-A Hetero INTERGENIC
SBS Chr4 17429936 T-C Hetero INTERGENIC
SBS Chr4 22216790 G-C Hetero INTERGENIC
SBS Chr4 30462840 C-T Hetero INTERGENIC
SBS Chr4 31291541 T-G Hetero INTERGENIC
SBS Chr5 11929218 T-A Homo INTERGENIC
SBS Chr6 13828129 G-A Hetero INTERGENIC
SBS Chr6 27252676 C-T Hetero INTERGENIC
SBS Chr6 28370727 C-T Hetero INTERGENIC
SBS Chr7 28647170 C-T Hetero INTERGENIC
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr9 8886427 C-T Hetero INTERGENIC
SBS Chr9 9317141 A-G Hetero INTERGENIC
SBS Chr10 1321436 C-G Hetero INTERGENIC
SBS Chr10 4836415 C-A Homo INTERGENIC
SBS Chr11 5792639 A-G Hetero INTERGENIC
SBS Chr11 26927385 C-T Homo INTERGENIC
SBS Chr12 4049356 G-T Hetero INTRON
SBS Chr12 4242765 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3424030 3424032 2
Deletion Chr10 5687222 5687224 2
Deletion Chr10 6294310 6294319 9
Deletion Chr12 12224001 12251000 26999 OsKitaake12g106100
Deletion Chr10 19685001 19718000 32999 4
Deletion Chr4 20549895 20549896 1
Deletion Chr3 23706518 23706520 2
Deletion Chr11 25695258 25695265 7
Deletion Chr1 27453667 27453682 15
Deletion Chr7 29100622 29100625 3 OsKitaake07g277900
Deletion Chr3 30544057 30544058 1
Deletion Chr2 32109467 32109471 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2917658 2917660 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4232351 4235870
Inversion Chr12 4232445 4235959
Inversion Chr11 28196487 28344045
Inversion Chr4 33958698 33973988 OsKitaake04g283000
Inversion Chr4 33958721 33973999 OsKitaake04g283000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2906590 Chr4 16633558

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1458065	T-A	Homo	UTR_5_PRIME
SBS	Chr1	10615656	G-C	Hetero	INTERGENIC
SBS	Chr1	13958671	T-G	Hetero	INTERGENIC
SBS	Chr1	37550318	C-A	Homo	INTERGENIC
SBS	Chr1	38035221	G-A	Homo	INTERGENIC
SBS	Chr2	1105936	T-G	Homo	INTRON
SBS	Chr2	6674102	T-C	Homo	INTERGENIC
SBS	Chr2	18527737	C-T	Hetero	INTERGENIC
SBS	Chr2	26397372	T-G	Hetero	INTRON
SBS	Chr3	8429535	C-T	Hetero	INTERGENIC
SBS	Chr3	8530398	C-T	Hetero	INTERGENIC
SBS	Chr3	26153798	G-A	Hetero	INTERGENIC
SBS	Chr4	14414186	C-A	Hetero	INTERGENIC
SBS	Chr4	17429936	T-C	Hetero	INTERGENIC
SBS	Chr4	22216790	G-C	Hetero	INTERGENIC
SBS	Chr4	30462840	C-T	Hetero	INTERGENIC
SBS	Chr4	31291541	T-G	Hetero	INTERGENIC
SBS	Chr5	11929218	T-A	Homo	INTERGENIC
SBS	Chr6	13828129	G-A	Hetero	INTERGENIC
SBS	Chr6	27252676	C-T	Hetero	INTERGENIC
SBS	Chr6	28370727	C-T	Hetero	INTERGENIC
SBS	Chr7	28647170	C-T	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr9	8886427	C-T	Hetero	INTERGENIC
SBS	Chr9	9317141	A-G	Hetero	INTERGENIC
SBS	Chr10	1321436	C-G	Hetero	INTERGENIC
SBS	Chr10	4836415	C-A	Homo	INTERGENIC
SBS	Chr11	5792639	A-G	Hetero	INTERGENIC
SBS	Chr11	26927385	C-T	Homo	INTERGENIC
SBS	Chr12	4049356	G-T	Hetero	INTRON
SBS	Chr12	4242765	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3424030	3424032	2
Deletion	Chr10	5687222	5687224	2
Deletion	Chr10	6294310	6294319	9
Deletion	Chr12	12224001	12251000	26999	OsKitaake12g106100
Deletion	Chr10	19685001	19718000	32999	4
Deletion	Chr4	20549895	20549896	1
Deletion	Chr3	23706518	23706520	2
Deletion	Chr11	25695258	25695265	7
Deletion	Chr1	27453667	27453682	15
Deletion	Chr7	29100622	29100625	3	OsKitaake07g277900
Deletion	Chr3	30544057	30544058	1
Deletion	Chr2	32109467	32109471	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4232351	4235870
Inversion	Chr12	4232445	4235959
Inversion	Chr11	28196487	28344045
Inversion	Chr4	33958698	33973988	OsKitaake04g283000
Inversion	Chr4	33958721	33973999	OsKitaake04g283000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes