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Mutant Information

Mutant Name	FN1703-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1703-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28859376 G-A Hetero INTRON
SBS Chr1 28859377 T-A Hetero INTRON
SBS Chr1 30849129 A-T Hetero INTERGENIC
SBS Chr2 1080145 A-T Hetero INTERGENIC
SBS Chr2 11833997 C-T Homo INTERGENIC
SBS Chr3 5193732 A-G Hetero INTERGENIC
SBS Chr3 6020608 T-A Hetero INTERGENIC
SBS Chr3 7497419 A-G Hetero INTERGENIC
SBS Chr3 14066624 G-A Hetero INTERGENIC
SBS Chr3 27537747 G-A Hetero INTERGENIC
SBS Chr4 1959995 C-T Homo INTERGENIC
SBS Chr4 1959998 C-G Homo INTERGENIC
SBS Chr4 1960002 A-G Homo INTERGENIC
SBS Chr4 7695589 C-T Homo INTERGENIC
SBS Chr6 6853431 C-A Homo INTERGENIC
SBS Chr6 12692877 A-T Homo INTRON
SBS Chr6 15167063 C-T Homo INTRON
SBS Chr6 25950976 G-A Homo INTERGENIC
SBS Chr7 666864 G-A Hetero INTERGENIC
SBS Chr7 1969045 A-G Hetero INTERGENIC
SBS Chr7 22612321 G-A Hetero INTERGENIC
SBS Chr7 27773427 G-T Hetero INTRON
SBS Chr8 13213087 A-C Hetero INTERGENIC
SBS Chr8 16191273 T-C Hetero INTERGENIC
SBS Chr8 24289296 A-G Homo NON_SYNONYMOUS_CODING OsKitaake08g187800
SBS Chr8 24575714 G-A Hetero INTERGENIC
SBS Chr9 4350759 T-A Hetero INTERGENIC
SBS Chr10 1963501 G-A Homo INTERGENIC
SBS Chr10 5715657 A-G Homo INTERGENIC
SBS Chr10 5715664 A-T Homo INTERGENIC
SBS Chr10 20615748 T-C Homo INTERGENIC
SBS Chr11 23535023 C-A Hetero INTERGENIC
SBS Chr12 25160865 G-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 622593 622596 3
Deletion Chr3 1408567 1408568 1
Deletion Chr7 4952302 4952303 1 OsKitaake07g060700
Deletion Chr2 5172576 5172578 2
Deletion Chr9 8557001 8776000 218999 10
Deletion Chr10 9684113 9684115 2
Deletion Chr2 11830373 11830374 1
Deletion Chr6 13139001 13210000 70999 2
Deletion Chr1 13956728 13956729 1
Deletion Chr3 19298922 19298923 1
Deletion Chr8 19358809 19358810 1
Deletion Chr3 28820459 28820465 6 OsKitaake03g298700
Deletion Chr1 43611896 43611900 4 OsKitaake01g484300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 7362924 7362926 1
Insertion Chr8 17299694 17299698 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 5183853 5271178 OsKitaake12g065600
Inversion Chr12 5183860 5271192 OsKitaake12g065600
Inversion Chr6 11574823 11630816
Inversion Chr6 13139261 13415842 OsKitaake06g141400
Inversion Chr6 13206985 13462754
Inversion Chr6 13415851 13515698 OsKitaake06g141400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28859376	G-A	Hetero	INTRON
SBS	Chr1	28859377	T-A	Hetero	INTRON
SBS	Chr1	30849129	A-T	Hetero	INTERGENIC
SBS	Chr2	1080145	A-T	Hetero	INTERGENIC
SBS	Chr2	11833997	C-T	Homo	INTERGENIC
SBS	Chr3	5193732	A-G	Hetero	INTERGENIC
SBS	Chr3	6020608	T-A	Hetero	INTERGENIC
SBS	Chr3	7497419	A-G	Hetero	INTERGENIC
SBS	Chr3	14066624	G-A	Hetero	INTERGENIC
SBS	Chr3	27537747	G-A	Hetero	INTERGENIC
SBS	Chr4	1959995	C-T	Homo	INTERGENIC
SBS	Chr4	1959998	C-G	Homo	INTERGENIC
SBS	Chr4	1960002	A-G	Homo	INTERGENIC
SBS	Chr4	7695589	C-T	Homo	INTERGENIC
SBS	Chr6	6853431	C-A	Homo	INTERGENIC
SBS	Chr6	12692877	A-T	Homo	INTRON
SBS	Chr6	15167063	C-T	Homo	INTRON
SBS	Chr6	25950976	G-A	Homo	INTERGENIC
SBS	Chr7	666864	G-A	Hetero	INTERGENIC
SBS	Chr7	1969045	A-G	Hetero	INTERGENIC
SBS	Chr7	22612321	G-A	Hetero	INTERGENIC
SBS	Chr7	27773427	G-T	Hetero	INTRON
SBS	Chr8	13213087	A-C	Hetero	INTERGENIC
SBS	Chr8	16191273	T-C	Hetero	INTERGENIC
SBS	Chr8	24289296	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g187800
SBS	Chr8	24575714	G-A	Hetero	INTERGENIC
SBS	Chr9	4350759	T-A	Hetero	INTERGENIC
SBS	Chr10	1963501	G-A	Homo	INTERGENIC
SBS	Chr10	5715657	A-G	Homo	INTERGENIC
SBS	Chr10	5715664	A-T	Homo	INTERGENIC
SBS	Chr10	20615748	T-C	Homo	INTERGENIC
SBS	Chr11	23535023	C-A	Hetero	INTERGENIC
SBS	Chr12	25160865	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	622593	622596	3
Deletion	Chr3	1408567	1408568	1
Deletion	Chr7	4952302	4952303	1	OsKitaake07g060700
Deletion	Chr2	5172576	5172578	2
Deletion	Chr9	8557001	8776000	218999	10
Deletion	Chr10	9684113	9684115	2
Deletion	Chr2	11830373	11830374	1
Deletion	Chr6	13139001	13210000	70999	2
Deletion	Chr1	13956728	13956729	1
Deletion	Chr3	19298922	19298923	1
Deletion	Chr8	19358809	19358810	1
Deletion	Chr3	28820459	28820465	6	OsKitaake03g298700
Deletion	Chr1	43611896	43611900	4	OsKitaake01g484300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5183853	5271178	OsKitaake12g065600
Inversion	Chr12	5183860	5271192	OsKitaake12g065600
Inversion	Chr6	11574823	11630816
Inversion	Chr6	13139261	13415842	OsKitaake06g141400
Inversion	Chr6	13206985	13462754
Inversion	Chr6	13415851	13515698	OsKitaake06g141400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes