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Mutant Information

Mutant Name	FN1707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1707-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1479172 T-A Hetero INTERGENIC
SBS Chr1 3319777 A-G Hetero INTRON
SBS Chr1 7787454 G-A Homo INTERGENIC
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 39245755 C-T Hetero INTRON
SBS Chr2 12131951 G-A Hetero INTERGENIC
SBS Chr2 16162520 G-A Hetero INTERGENIC
SBS Chr2 33514553 G-C Homo INTRON
SBS Chr2 36125843 T-C Homo INTRON
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 11610158 A-T Homo INTERGENIC
SBS Chr3 13404737 G-T Hetero INTERGENIC
SBS Chr3 30322714 A-G Hetero INTERGENIC
SBS Chr3 31927817 T-G Hetero INTERGENIC
SBS Chr3 37564419 G-A Hetero INTERGENIC
SBS Chr4 6614769 C-T Hetero INTERGENIC
SBS Chr4 11227559 T-C Hetero INTERGENIC
SBS Chr4 14908611 G-A Hetero INTERGENIC
SBS Chr4 22015569 G-A Homo INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 32634200 G-A Homo INTERGENIC
SBS Chr4 32634201 A-T Homo INTERGENIC
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 4002742 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g048500
SBS Chr5 13917063 A-C Hetero INTERGENIC
SBS Chr5 20916175 C-T Homo INTERGENIC
SBS Chr5 23594129 C-T Hetero INTERGENIC
SBS Chr5 25919462 T-C Homo INTERGENIC
SBS Chr6 11342861 T-A Hetero INTERGENIC
SBS Chr6 11725213 G-A Hetero INTERGENIC
SBS Chr6 21431049 T-A Hetero INTERGENIC
SBS Chr6 23307377 G-T Hetero UTR_3_PRIME
SBS Chr6 24968493 C-A Hetero INTERGENIC
SBS Chr6 25423512 G-A Hetero INTERGENIC
SBS Chr7 6445979 C-T Homo INTERGENIC
SBS Chr7 7295030 C-T Homo INTERGENIC
SBS Chr7 11935089 C-T Homo INTERGENIC
SBS Chr7 22385987 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g189900
SBS Chr7 22385989 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g189900
SBS Chr7 23458365 T-A Hetero INTERGENIC
SBS Chr8 21045119 A-G Hetero INTERGENIC
SBS Chr8 21078816 G-A Hetero INTERGENIC
SBS Chr8 27651436 A-G Hetero INTERGENIC
SBS Chr8 28403928 C-T Hetero INTERGENIC
SBS Chr8 28718807 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 9515454 T-A Hetero INTERGENIC
SBS Chr10 14506179 C-T Hetero INTERGENIC
SBS Chr10 18262754 A-G Hetero INTERGENIC
SBS Chr10 19607801 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 1127699 A-C Hetero INTERGENIC
SBS Chr11 9915931 G-T Hetero INTERGENIC
SBS Chr11 14227113 A-C Hetero INTERGENIC
SBS Chr11 14291272 T-C Homo INTRON
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr11 26241956 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g212000
SBS Chr12 11115886 A-G Homo INTERGENIC
SBS Chr12 16699309 G-A Hetero INTERGENIC
SBS Chr12 17137955 A-C Hetero INTERGENIC
SBS Chr12 18369624 G-A Hetero INTERGENIC
SBS Chr12 19334632 G-A Hetero INTERGENIC
SBS Chr12 19334676 T-A Hetero INTERGENIC
SBS Chr12 25649490 C-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1512592 1512594 2
Deletion Chr2 18402626 18402628 2
Deletion Chr12 19056194 19056195 1
Deletion Chr10 19607784 19607788 4 OsKitaake10g144500
Deletion Chr3 21173008 21173009 1
Deletion Chr3 28413427 28413430 3
Deletion Chr4 33092817 33092818 1
Deletion Chr2 35361276 35361286 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 29470751 29470759 7
Insertion Chr12 17624103 17624106 2
Insertion Chr7 13341701 13341703 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5993396 6752720
Inversion Chr1 6752733 7099703 OsKitaake01g088800
Inversion Chr3 7648252 7677848 2
Inversion Chr3 7648257 7677847 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1479172	T-A	Hetero	INTERGENIC
SBS	Chr1	3319777	A-G	Hetero	INTRON
SBS	Chr1	7787454	G-A	Homo	INTERGENIC
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	39245755	C-T	Hetero	INTRON
SBS	Chr2	12131951	G-A	Hetero	INTERGENIC
SBS	Chr2	16162520	G-A	Hetero	INTERGENIC
SBS	Chr2	33514553	G-C	Homo	INTRON
SBS	Chr2	36125843	T-C	Homo	INTRON
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	11610158	A-T	Homo	INTERGENIC
SBS	Chr3	13404737	G-T	Hetero	INTERGENIC
SBS	Chr3	30322714	A-G	Hetero	INTERGENIC
SBS	Chr3	31927817	T-G	Hetero	INTERGENIC
SBS	Chr3	37564419	G-A	Hetero	INTERGENIC
SBS	Chr4	6614769	C-T	Hetero	INTERGENIC
SBS	Chr4	11227559	T-C	Hetero	INTERGENIC
SBS	Chr4	14908611	G-A	Hetero	INTERGENIC
SBS	Chr4	22015569	G-A	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	32634200	G-A	Homo	INTERGENIC
SBS	Chr4	32634201	A-T	Homo	INTERGENIC
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	4002742	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g048500
SBS	Chr5	13917063	A-C	Hetero	INTERGENIC
SBS	Chr5	20916175	C-T	Homo	INTERGENIC
SBS	Chr5	23594129	C-T	Hetero	INTERGENIC
SBS	Chr5	25919462	T-C	Homo	INTERGENIC
SBS	Chr6	11342861	T-A	Hetero	INTERGENIC
SBS	Chr6	11725213	G-A	Hetero	INTERGENIC
SBS	Chr6	21431049	T-A	Hetero	INTERGENIC
SBS	Chr6	23307377	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	24968493	C-A	Hetero	INTERGENIC
SBS	Chr6	25423512	G-A	Hetero	INTERGENIC
SBS	Chr7	6445979	C-T	Homo	INTERGENIC
SBS	Chr7	7295030	C-T	Homo	INTERGENIC
SBS	Chr7	11935089	C-T	Homo	INTERGENIC
SBS	Chr7	22385987	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g189900
SBS	Chr7	22385989	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g189900
SBS	Chr7	23458365	T-A	Hetero	INTERGENIC
SBS	Chr8	21045119	A-G	Hetero	INTERGENIC
SBS	Chr8	21078816	G-A	Hetero	INTERGENIC
SBS	Chr8	27651436	A-G	Hetero	INTERGENIC
SBS	Chr8	28403928	C-T	Hetero	INTERGENIC
SBS	Chr8	28718807	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	9515454	T-A	Hetero	INTERGENIC
SBS	Chr10	14506179	C-T	Hetero	INTERGENIC
SBS	Chr10	18262754	A-G	Hetero	INTERGENIC
SBS	Chr10	19607801	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	1127699	A-C	Hetero	INTERGENIC
SBS	Chr11	9915931	G-T	Hetero	INTERGENIC
SBS	Chr11	14227113	A-C	Hetero	INTERGENIC
SBS	Chr11	14291272	T-C	Homo	INTRON
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr11	26241956	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g212000
SBS	Chr12	11115886	A-G	Homo	INTERGENIC
SBS	Chr12	16699309	G-A	Hetero	INTERGENIC
SBS	Chr12	17137955	A-C	Hetero	INTERGENIC
SBS	Chr12	18369624	G-A	Hetero	INTERGENIC
SBS	Chr12	19334632	G-A	Hetero	INTERGENIC
SBS	Chr12	19334676	T-A	Hetero	INTERGENIC
SBS	Chr12	25649490	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1512592	1512594	2
Deletion	Chr2	18402626	18402628	2
Deletion	Chr12	19056194	19056195	1
Deletion	Chr10	19607784	19607788	4	OsKitaake10g144500
Deletion	Chr3	21173008	21173009	1
Deletion	Chr3	28413427	28413430	3
Deletion	Chr4	33092817	33092818	1
Deletion	Chr2	35361276	35361286	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5993396	6752720
Inversion	Chr1	6752733	7099703	OsKitaake01g088800
Inversion	Chr3	7648252	7677848	2
Inversion	Chr3	7648257	7677847	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes