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Mutant Information

Mutant Name	FN1708-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1708-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7824386 A-G Hetero INTERGENIC
SBS Chr2 9226592 G-T Hetero INTERGENIC
SBS Chr2 30263908 A-G Homo INTERGENIC
SBS Chr3 35285691 C-T Hetero INTRON
SBS Chr4 28072266 C-A Homo INTERGENIC
SBS Chr4 29061957 A-T Homo INTERGENIC
SBS Chr4 36478160 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g317400
SBS Chr5 6359653 G-C Hetero INTERGENIC
SBS Chr5 12772845 G-A Hetero INTERGENIC
SBS Chr5 14009580 G-A Hetero INTERGENIC
SBS Chr6 18135872 G-C Hetero INTERGENIC
SBS Chr6 20073085 C-A Hetero INTERGENIC
SBS Chr6 25133507 T-G Hetero INTERGENIC
SBS Chr7 6286871 G-C Homo INTERGENIC
SBS Chr7 7336901 C-T Homo INTERGENIC
SBS Chr9 9856310 C-T Hetero INTERGENIC
SBS Chr9 21775488 C-G Hetero INTERGENIC
SBS Chr10 13222613 G-A Homo INTERGENIC
SBS Chr10 18791926 G-A Homo INTERGENIC
SBS Chr11 13334804 G-T Hetero INTERGENIC
SBS Chr11 26412843 C-T Hetero INTERGENIC
SBS Chr12 21278476 G-A Hetero INTERGENIC
SBS Chr12 22852985 C-T Hetero INTRON
SBS Chr12 22852990 T-C Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1907779 1907784 5 OsKitaake10g015000
Deletion Chr5 5893760 5893848 88
Deletion Chr4 9729525 9729534 9
Deletion Chr12 11719649 11719804 155
Deletion Chr3 18625502 18625509 7
Deletion Chr3 18886423 18886431 8
Deletion Chr3 20276964 20276965 1
Deletion Chr3 23222237 23222241 4
Deletion Chr11 27843630 27843637 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 21170463 21346779 OsKitaake03g235500
Inversion Chr3 21170473 21346792 OsKitaake03g235500
Inversion Chr3 30170051 30184563 OsKitaake03g316200
Inversion Chr3 30170053 30184577 OsKitaake03g316200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2859436 Chr1 17997920
Translocation Chr11 13931056 Chr10 8624148

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7824386	A-G	Hetero	INTERGENIC
SBS	Chr2	9226592	G-T	Hetero	INTERGENIC
SBS	Chr2	30263908	A-G	Homo	INTERGENIC
SBS	Chr3	35285691	C-T	Hetero	INTRON
SBS	Chr4	28072266	C-A	Homo	INTERGENIC
SBS	Chr4	29061957	A-T	Homo	INTERGENIC
SBS	Chr4	36478160	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g317400
SBS	Chr5	6359653	G-C	Hetero	INTERGENIC
SBS	Chr5	12772845	G-A	Hetero	INTERGENIC
SBS	Chr5	14009580	G-A	Hetero	INTERGENIC
SBS	Chr6	18135872	G-C	Hetero	INTERGENIC
SBS	Chr6	20073085	C-A	Hetero	INTERGENIC
SBS	Chr6	25133507	T-G	Hetero	INTERGENIC
SBS	Chr7	6286871	G-C	Homo	INTERGENIC
SBS	Chr7	7336901	C-T	Homo	INTERGENIC
SBS	Chr9	9856310	C-T	Hetero	INTERGENIC
SBS	Chr9	21775488	C-G	Hetero	INTERGENIC
SBS	Chr10	13222613	G-A	Homo	INTERGENIC
SBS	Chr10	18791926	G-A	Homo	INTERGENIC
SBS	Chr11	13334804	G-T	Hetero	INTERGENIC
SBS	Chr11	26412843	C-T	Hetero	INTERGENIC
SBS	Chr12	21278476	G-A	Hetero	INTERGENIC
SBS	Chr12	22852985	C-T	Hetero	INTRON
SBS	Chr12	22852990	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1907779	1907784	5	OsKitaake10g015000
Deletion	Chr5	5893760	5893848	88
Deletion	Chr4	9729525	9729534	9
Deletion	Chr12	11719649	11719804	155
Deletion	Chr3	18625502	18625509	7
Deletion	Chr3	18886423	18886431	8
Deletion	Chr3	20276964	20276965	1
Deletion	Chr3	23222237	23222241	4
Deletion	Chr11	27843630	27843637	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21170463	21346779	OsKitaake03g235500
Inversion	Chr3	21170473	21346792	OsKitaake03g235500
Inversion	Chr3	30170051	30184563	OsKitaake03g316200
Inversion	Chr3	30170053	30184577	OsKitaake03g316200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes