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Mutant Information

Mutant Name	FN1711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1711-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1977637 G-A Hetero INTRON
SBS Chr1 9852177 C-T Homo INTERGENIC
SBS Chr1 14074197 G-A Hetero INTERGENIC
SBS Chr1 20617790 C-T Homo INTERGENIC
SBS Chr1 39973043 C-T Homo INTERGENIC
SBS Chr2 9244776 G-A Homo INTRON
SBS Chr3 15648732 A-C Hetero INTERGENIC
SBS Chr3 20505793 C-T Homo INTERGENIC
SBS Chr3 29115181 T-C Homo INTERGENIC
SBS Chr4 12724095 G-A Hetero INTERGENIC
SBS Chr4 21396330 T-A Hetero INTERGENIC
SBS Chr4 22286727 C-T Hetero INTERGENIC
SBS Chr4 29552042 T-A Hetero INTERGENIC
SBS Chr4 34619414 A-G Hetero INTERGENIC
SBS Chr5 401947 G-A Homo INTERGENIC
SBS Chr5 4083897 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g049200
SBS Chr5 21408671 C-T Hetero INTERGENIC
SBS Chr5 27536072 G-A Hetero INTERGENIC
SBS Chr7 11018388 C-T Homo INTERGENIC
SBS Chr7 28784803 C-T Hetero INTERGENIC
SBS Chr8 797746 C-T Hetero INTERGENIC
SBS Chr8 12729716 C-A Hetero INTERGENIC
SBS Chr8 23497035 T-C Hetero INTERGENIC
SBS Chr9 3021953 A-T Homo UTR_3_PRIME
SBS Chr10 3299677 G-T Homo INTERGENIC
SBS Chr10 14903877 A-T Homo SPLICE_SITE_REGION
SBS Chr10 14903878 T-G Homo SPLICE_SITE_REGION
SBS Chr10 21170156 T-G Homo INTRON
SBS Chr11 13786690 G-A Hetero INTERGENIC
SBS Chr12 3685913 T-C Homo INTRON
SBS Chr12 15643288 G-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 52182 52184 2
Deletion Chr5 2236508 2236509 1
Deletion Chr4 2513845 2513856 11
Deletion Chr7 5481516 5481517 1
Deletion Chr4 10886987 10886996 9
Deletion Chr5 13595101 13595102 1
Deletion Chr10 16398562 16398569 7
Deletion Chr8 23272990 23272997 7
Deletion Chr1 24124575 24124582 7
Deletion Chr3 25064518 25064525 7
Deletion Chr1 31480401 31480403 2 OsKitaake01g315900
Deletion Chr1 39488838 39488844 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21993985 21993988 2
Insertion Chr6 16356637 16356640 2
Insertion Chr7 25703853 25703861 7
Insertion Chr11 28449198 28449201 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1977637	G-A	Hetero	INTRON
SBS	Chr1	9852177	C-T	Homo	INTERGENIC
SBS	Chr1	14074197	G-A	Hetero	INTERGENIC
SBS	Chr1	20617790	C-T	Homo	INTERGENIC
SBS	Chr1	39973043	C-T	Homo	INTERGENIC
SBS	Chr2	9244776	G-A	Homo	INTRON
SBS	Chr3	15648732	A-C	Hetero	INTERGENIC
SBS	Chr3	20505793	C-T	Homo	INTERGENIC
SBS	Chr3	29115181	T-C	Homo	INTERGENIC
SBS	Chr4	12724095	G-A	Hetero	INTERGENIC
SBS	Chr4	21396330	T-A	Hetero	INTERGENIC
SBS	Chr4	22286727	C-T	Hetero	INTERGENIC
SBS	Chr4	29552042	T-A	Hetero	INTERGENIC
SBS	Chr4	34619414	A-G	Hetero	INTERGENIC
SBS	Chr5	401947	G-A	Homo	INTERGENIC
SBS	Chr5	4083897	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g049200
SBS	Chr5	21408671	C-T	Hetero	INTERGENIC
SBS	Chr5	27536072	G-A	Hetero	INTERGENIC
SBS	Chr7	11018388	C-T	Homo	INTERGENIC
SBS	Chr7	28784803	C-T	Hetero	INTERGENIC
SBS	Chr8	797746	C-T	Hetero	INTERGENIC
SBS	Chr8	12729716	C-A	Hetero	INTERGENIC
SBS	Chr8	23497035	T-C	Hetero	INTERGENIC
SBS	Chr9	3021953	A-T	Homo	UTR_3_PRIME
SBS	Chr10	3299677	G-T	Homo	INTERGENIC
SBS	Chr10	14903877	A-T	Homo	SPLICE_SITE_REGION
SBS	Chr10	14903878	T-G	Homo	SPLICE_SITE_REGION
SBS	Chr10	21170156	T-G	Homo	INTRON
SBS	Chr11	13786690	G-A	Hetero	INTERGENIC
SBS	Chr12	3685913	T-C	Homo	INTRON
SBS	Chr12	15643288	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr5	2236508	2236509	1
Deletion	Chr4	2513845	2513856	11
Deletion	Chr7	5481516	5481517	1
Deletion	Chr4	10886987	10886996	9
Deletion	Chr5	13595101	13595102	1
Deletion	Chr10	16398562	16398569	7
Deletion	Chr8	23272990	23272997	7
Deletion	Chr1	24124575	24124582	7
Deletion	Chr3	25064518	25064525	7
Deletion	Chr1	31480401	31480403	2	OsKitaake01g315900
Deletion	Chr1	39488838	39488844	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes