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Mutant Information

Mutant Name	FN1712-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1712-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1521459 T-C Hetero INTERGENIC
SBS Chr2 28469480 C-T Hetero INTRON
SBS Chr3 22105749 C-A Hetero INTERGENIC
SBS Chr3 36855774 T-C Hetero INTRON
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 21455268 A-T Hetero INTRON
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 33945673 G-A Homo INTRON
SBS Chr7 7935188 A-G Hetero INTERGENIC
SBS Chr7 8982243 A-T Hetero INTERGENIC
SBS Chr7 14537827 T-C Hetero INTERGENIC
SBS Chr7 20282979 A-T Hetero INTRON
SBS Chr8 7092289 G-A Hetero INTERGENIC
SBS Chr8 12544123 T-A Hetero INTRON
SBS Chr8 14780662 C-T Hetero INTERGENIC
SBS Chr10 23514502 G-A Hetero INTERGENIC
SBS Chr11 10350745 T-C Hetero INTERGENIC
SBS Chr11 10655925 G-A Hetero INTRON
SBS Chr11 10770142 G-T Homo INTERGENIC
SBS Chr11 18170074 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g141600
SBS Chr11 18170076 G-T Homo NON_SYNONYMOUS_CODING OsKitaake11g141600
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1477491 1477493 2
Deletion Chr4 2595001 2690000 94999 OsKitaake04g015800
Deletion Chr2 2618001 2655000 36999 6
Deletion Chr11 2678059 2678061 2
Deletion Chr6 4068100 4068101 1
Deletion Chr8 8538213 8538215 2
Deletion Chr10 12834913 12834915 2
Deletion Chr2 13678329 13678331 2
Deletion Chr11 16556808 16556816 8
Deletion Chr11 17712072 17712074 2
Deletion Chr3 18853195 18853202 7
Deletion Chr7 19953084 19953088 4
Deletion Chr10 21471579 21471582 3
Deletion Chr3 30611210 30611212 2
Deletion Chr1 40112403 40112409 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20847101 20847104 2
Insertion Chr6 3314139 3314142 2
Insertion Chr6 24183681 24183686 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19450900 20286119
Inversion Chr7 19450907 20286120

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19406509 Chr1 34236141
Translocation Chr8 19406623 Chr1 34063521
Translocation Chr8 19406670 Chr1 34238760
Translocation Chr7 19470022 Chr1 37175827
Translocation Chr7 19470028 Chr1 37174772
Translocation Chr7 19949052 Chr1 34238720
Translocation Chr7 19949098 Chr1 34238316

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1521459	T-C	Hetero	INTERGENIC
SBS	Chr2	28469480	C-T	Hetero	INTRON
SBS	Chr3	22105749	C-A	Hetero	INTERGENIC
SBS	Chr3	36855774	T-C	Hetero	INTRON
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	21455268	A-T	Hetero	INTRON
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	33945673	G-A	Homo	INTRON
SBS	Chr7	7935188	A-G	Hetero	INTERGENIC
SBS	Chr7	8982243	A-T	Hetero	INTERGENIC
SBS	Chr7	14537827	T-C	Hetero	INTERGENIC
SBS	Chr7	20282979	A-T	Hetero	INTRON
SBS	Chr8	7092289	G-A	Hetero	INTERGENIC
SBS	Chr8	12544123	T-A	Hetero	INTRON
SBS	Chr8	14780662	C-T	Hetero	INTERGENIC
SBS	Chr10	23514502	G-A	Hetero	INTERGENIC
SBS	Chr11	10350745	T-C	Hetero	INTERGENIC
SBS	Chr11	10655925	G-A	Hetero	INTRON
SBS	Chr11	10770142	G-T	Homo	INTERGENIC
SBS	Chr11	18170074	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g141600
SBS	Chr11	18170076	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g141600
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1477491	1477493	2
Deletion	Chr4	2595001	2690000	94999	OsKitaake04g015800
Deletion	Chr2	2618001	2655000	36999	6
Deletion	Chr11	2678059	2678061	2
Deletion	Chr6	4068100	4068101	1
Deletion	Chr8	8538213	8538215	2
Deletion	Chr10	12834913	12834915	2
Deletion	Chr2	13678329	13678331	2
Deletion	Chr11	16556808	16556816	8
Deletion	Chr11	17712072	17712074	2
Deletion	Chr3	18853195	18853202	7
Deletion	Chr7	19953084	19953088	4
Deletion	Chr10	21471579	21471582	3
Deletion	Chr3	30611210	30611212	2
Deletion	Chr1	40112403	40112409	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19450900	20286119
Inversion	Chr7	19450907	20286120

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes