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Mutant Information

Mutant Name	FN1713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1713-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr2 14149028 G-A Homo INTERGENIC
SBS Chr3 3622646 T-A Hetero INTERGENIC
SBS Chr4 2800499 C-T Homo INTERGENIC
SBS Chr4 11508585 G-T Hetero INTERGENIC
SBS Chr5 3970105 C-T Homo INTRON
SBS Chr5 18826982 C-T Homo INTERGENIC
SBS Chr5 29691748 C-T Homo INTERGENIC
SBS Chr7 9294556 A-C Homo INTERGENIC
SBS Chr7 22821303 T-G Homo INTERGENIC
SBS Chr8 6227680 G-A Hetero INTRON
SBS Chr8 13593253 A-G Hetero UTR_3_PRIME
SBS Chr8 19429201 G-A Hetero INTERGENIC
SBS Chr8 25848124 T-C Homo INTERGENIC
SBS Chr9 11865254 G-C Hetero INTERGENIC
SBS Chr9 16617634 G-C Hetero INTERGENIC
SBS Chr10 23402369 C-T Hetero INTERGENIC
SBS Chr12 22443090 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 9770493 9770499 6
Deletion Chr12 13565975 13565981 6
Deletion Chr11 15461304 15461312 8
Deletion Chr2 16553353 16553356 3
Deletion Chr8 19686310 19686318 8
Deletion Chr9 19821129 19821130 1
Deletion Chr6 20204336 20204384 48
Deletion Chr7 22033397 22033407 10 OsKitaake07g185500
Deletion Chr12 24370403 24370404 1
Deletion Chr6 24774574 24774578 4
Deletion Chr1 28543652 28543656 4
Deletion Chr5 29371958 29371959 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 4893340 4893343 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr2	14149028	G-A	Homo	INTERGENIC
SBS	Chr3	3622646	T-A	Hetero	INTERGENIC
SBS	Chr4	2800499	C-T	Homo	INTERGENIC
SBS	Chr4	11508585	G-T	Hetero	INTERGENIC
SBS	Chr5	3970105	C-T	Homo	INTRON
SBS	Chr5	18826982	C-T	Homo	INTERGENIC
SBS	Chr5	29691748	C-T	Homo	INTERGENIC
SBS	Chr7	9294556	A-C	Homo	INTERGENIC
SBS	Chr7	22821303	T-G	Homo	INTERGENIC
SBS	Chr8	6227680	G-A	Hetero	INTRON
SBS	Chr8	13593253	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	19429201	G-A	Hetero	INTERGENIC
SBS	Chr8	25848124	T-C	Homo	INTERGENIC
SBS	Chr9	11865254	G-C	Hetero	INTERGENIC
SBS	Chr9	16617634	G-C	Hetero	INTERGENIC
SBS	Chr10	23402369	C-T	Hetero	INTERGENIC
SBS	Chr12	22443090	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	9770493	9770499	6
Deletion	Chr12	13565975	13565981	6
Deletion	Chr11	15461304	15461312	8
Deletion	Chr2	16553353	16553356	3
Deletion	Chr8	19686310	19686318	8
Deletion	Chr9	19821129	19821130	1
Deletion	Chr6	20204336	20204384	48
Deletion	Chr7	22033397	22033407	10	OsKitaake07g185500
Deletion	Chr12	24370403	24370404	1
Deletion	Chr6	24774574	24774578	4
Deletion	Chr1	28543652	28543656	4
Deletion	Chr5	29371958	29371959	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes