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Mutant Information

Mutant Name	FN1715-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1715-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 247288 C-T Hetero INTERGENIC
SBS Chr2 10783448 A-T Homo INTERGENIC
SBS Chr2 16743366 A-T Hetero INTRON
SBS Chr2 26767245 C-A Homo INTERGENIC
SBS Chr3 10717387 G-T Hetero UTR_3_PRIME
SBS Chr4 2557173 C-T Hetero INTERGENIC
SBS Chr4 34321996 G-A Homo INTERGENIC
SBS Chr5 6265345 A-T Hetero INTERGENIC
SBS Chr5 22628376 A-C Hetero INTERGENIC
SBS Chr6 2851315 T-G Homo INTERGENIC
SBS Chr6 15037477 A-T Homo INTERGENIC
SBS Chr6 20884170 T-C Homo INTERGENIC
SBS Chr7 1709744 C-T Hetero INTERGENIC
SBS Chr7 20379545 C-A Homo INTERGENIC
SBS Chr8 20768644 T-A Homo UTR_3_PRIME
SBS Chr9 5695108 G-A Hetero INTERGENIC
SBS Chr9 10084773 G-A Hetero INTERGENIC
SBS Chr9 10941076 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g067900
SBS Chr9 21584575 G-T Homo UTR_5_PRIME
SBS Chr11 8246583 G-A Homo INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 8657677 8657678 1
Deletion Chr2 8720954 8720963 9
Deletion Chr9 10569980 10569984 4
Deletion Chr2 10950574 10950585 11
Deletion Chr7 12164384 12164385 1
Deletion Chr5 18095636 18095643 7
Deletion Chr8 20454494 20454505 11 OsKitaake08g151700
Deletion Chr3 20710488 20710489 1
Deletion Chr6 22908261 22908263 2
Deletion Chr7 22931332 22931334 2
Deletion Chr5 24144976 24144978 2 OsKitaake05g214200
Deletion Chr1 24603759 24603762 3 OsKitaake01g237700
Deletion Chr4 35273012 35273022 10
Deletion Chr4 36290591 36290592 1 OsKitaake04g314300

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 24694370 24694373 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 27163509 27514296 2
Inversion Chr5 27163529 27514306 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	247288	C-T	Hetero	INTERGENIC
SBS	Chr2	10783448	A-T	Homo	INTERGENIC
SBS	Chr2	16743366	A-T	Hetero	INTRON
SBS	Chr2	26767245	C-A	Homo	INTERGENIC
SBS	Chr3	10717387	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	2557173	C-T	Hetero	INTERGENIC
SBS	Chr4	34321996	G-A	Homo	INTERGENIC
SBS	Chr5	6265345	A-T	Hetero	INTERGENIC
SBS	Chr5	22628376	A-C	Hetero	INTERGENIC
SBS	Chr6	2851315	T-G	Homo	INTERGENIC
SBS	Chr6	15037477	A-T	Homo	INTERGENIC
SBS	Chr6	20884170	T-C	Homo	INTERGENIC
SBS	Chr7	1709744	C-T	Hetero	INTERGENIC
SBS	Chr7	20379545	C-A	Homo	INTERGENIC
SBS	Chr8	20768644	T-A	Homo	UTR_3_PRIME
SBS	Chr9	5695108	G-A	Hetero	INTERGENIC
SBS	Chr9	10084773	G-A	Hetero	INTERGENIC
SBS	Chr9	10941076	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g067900
SBS	Chr9	21584575	G-T	Homo	UTR_5_PRIME
SBS	Chr11	8246583	G-A	Homo	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	8657677	8657678	1
Deletion	Chr2	8720954	8720963	9
Deletion	Chr9	10569980	10569984	4
Deletion	Chr2	10950574	10950585	11
Deletion	Chr7	12164384	12164385	1
Deletion	Chr5	18095636	18095643	7
Deletion	Chr8	20454494	20454505	11	OsKitaake08g151700
Deletion	Chr3	20710488	20710489	1
Deletion	Chr6	22908261	22908263	2
Deletion	Chr7	22931332	22931334	2
Deletion	Chr5	24144976	24144978	2	OsKitaake05g214200
Deletion	Chr1	24603759	24603762	3	OsKitaake01g237700
Deletion	Chr4	35273012	35273022	10
Deletion	Chr4	36290591	36290592	1	OsKitaake04g314300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	27163509	27514296	2
Inversion	Chr5	27163529	27514306	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes