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Mutant Information

Mutant Name	FN1716-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1716-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16056457 T-A Homo INTERGENIC
SBS Chr1 37377901 G-A Homo INTERGENIC
SBS Chr2 17034719 C-A Hetero INTERGENIC
SBS Chr2 20755697 G-A Hetero INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 19790989 C-G Hetero INTERGENIC
SBS Chr3 33351934 T-A Hetero INTERGENIC
SBS Chr4 472129 T-C Homo INTRON
SBS Chr4 5588285 T-A Homo INTERGENIC
SBS Chr4 7222632 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g036700
SBS Chr4 8014669 G-T Homo UTR_3_PRIME
SBS Chr4 15005796 A-T Homo INTERGENIC
SBS Chr6 8201615 C-A Homo INTRON
SBS Chr6 18270859 T-C Hetero INTERGENIC
SBS Chr6 18270860 C-T Hetero INTERGENIC
SBS Chr6 21285668 T-C Hetero INTERGENIC
SBS Chr7 2345058 G-A Homo INTERGENIC
SBS Chr7 3594907 A-T Hetero INTERGENIC
SBS Chr7 23043207 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g198300
SBS Chr8 3221890 A-G Hetero INTERGENIC
SBS Chr8 22558291 T-G Hetero INTERGENIC
SBS Chr9 2483218 A-T Homo INTERGENIC
SBS Chr9 4941318 T-C Homo INTERGENIC
SBS Chr10 3295334 C-T Hetero INTERGENIC
SBS Chr10 6395656 G-A Hetero INTERGENIC
SBS Chr10 20532846 G-C Homo NON_SYNONYMOUS_CODING OsKitaake10g157300
SBS Chr11 12009160 T-C Hetero INTRON
SBS Chr11 12612383 G-T Hetero INTERGENIC
SBS Chr11 17088002 T-G Hetero INTERGENIC
SBS Chr11 24858714 G-C Hetero INTERGENIC
SBS Chr11 27882108 C-T Homo SYNONYMOUS_CODING
SBS Chr12 14321358 C-T Homo INTERGENIC
SBS Chr12 23223085 G-T Homo SYNONYMOUS_CODING

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1053814 1053819 5
Deletion Chr1 2277964 2277966 2
Deletion Chr8 5469001 5519000 49999 8
Deletion Chr4 5780943 5780944 1
Deletion Chr10 6464001 6493000 28999 6
Deletion Chr4 7086558 7086579 21
Deletion Chr3 9576818 9576819 1
Deletion Chr9 10727251 10727253 2
Deletion Chr7 11008709 11008731 22
Deletion Chr2 12865765 12865769 4
Deletion Chr9 21112732 21112737 5
Deletion Chr1 21907636 21907653 17
Deletion Chr11 24502977 24502978 1
Deletion Chr5 24580744 24580745 1
Deletion Chr5 26951185 26951209 24
Deletion Chr2 27770460 27770462 2 OsKitaake02g279200
Deletion Chr1 32091481 32091483 2
Deletion Chr1 33459383 33459388 5
Deletion Chr2 36471345 36471348 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9054936 9054939 2
Insertion Chr1 38844665 38844668 2
Insertion Chr8 8790082 8790087 4
Insertion Chr12 8710812 8710815 2
Insertion Chr12 19828679 19828682 2
Insertion Chr8 1396065 1396067 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 22819002 Chr8 5515005 2
Translocation Chr12 26718919 Chr8 5471359 OsKitaake12g222000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16056457	T-A	Homo	INTERGENIC
SBS	Chr1	37377901	G-A	Homo	INTERGENIC
SBS	Chr2	17034719	C-A	Hetero	INTERGENIC
SBS	Chr2	20755697	G-A	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	19790989	C-G	Hetero	INTERGENIC
SBS	Chr3	33351934	T-A	Hetero	INTERGENIC
SBS	Chr4	472129	T-C	Homo	INTRON
SBS	Chr4	5588285	T-A	Homo	INTERGENIC
SBS	Chr4	7222632	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g036700
SBS	Chr4	8014669	G-T	Homo	UTR_3_PRIME
SBS	Chr4	15005796	A-T	Homo	INTERGENIC
SBS	Chr6	8201615	C-A	Homo	INTRON
SBS	Chr6	18270859	T-C	Hetero	INTERGENIC
SBS	Chr6	18270860	C-T	Hetero	INTERGENIC
SBS	Chr6	21285668	T-C	Hetero	INTERGENIC
SBS	Chr7	2345058	G-A	Homo	INTERGENIC
SBS	Chr7	3594907	A-T	Hetero	INTERGENIC
SBS	Chr7	23043207	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g198300
SBS	Chr8	3221890	A-G	Hetero	INTERGENIC
SBS	Chr8	22558291	T-G	Hetero	INTERGENIC
SBS	Chr9	2483218	A-T	Homo	INTERGENIC
SBS	Chr9	4941318	T-C	Homo	INTERGENIC
SBS	Chr10	3295334	C-T	Hetero	INTERGENIC
SBS	Chr10	6395656	G-A	Hetero	INTERGENIC
SBS	Chr10	20532846	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g157300
SBS	Chr11	12009160	T-C	Hetero	INTRON
SBS	Chr11	12612383	G-T	Hetero	INTERGENIC
SBS	Chr11	17088002	T-G	Hetero	INTERGENIC
SBS	Chr11	24858714	G-C	Hetero	INTERGENIC
SBS	Chr11	27882108	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	14321358	C-T	Homo	INTERGENIC
SBS	Chr12	23223085	G-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1053814	1053819	5
Deletion	Chr1	2277964	2277966	2
Deletion	Chr8	5469001	5519000	49999	8
Deletion	Chr4	5780943	5780944	1
Deletion	Chr10	6464001	6493000	28999	6
Deletion	Chr4	7086558	7086579	21
Deletion	Chr3	9576818	9576819	1
Deletion	Chr9	10727251	10727253	2
Deletion	Chr7	11008709	11008731	22
Deletion	Chr2	12865765	12865769	4
Deletion	Chr9	21112732	21112737	5
Deletion	Chr1	21907636	21907653	17
Deletion	Chr11	24502977	24502978	1
Deletion	Chr5	24580744	24580745	1
Deletion	Chr5	26951185	26951209	24
Deletion	Chr2	27770460	27770462	2	OsKitaake02g279200
Deletion	Chr1	32091481	32091483	2
Deletion	Chr1	33459383	33459388	5
Deletion	Chr2	36471345	36471348	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	22819002	Chr8	5515005	2
Translocation	Chr12	26718919	Chr8	5471359	OsKitaake12g222000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes