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Mutant Information

Mutant Name	FN1717-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1717-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4890684 A-G Homo INTERGENIC
SBS Chr1 16054312 T-G Hetero INTERGENIC
SBS Chr2 7948616 G-C Hetero INTERGENIC
SBS Chr2 26756755 C-T Hetero INTRON
SBS Chr2 27540601 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g276900
SBS Chr2 27781370 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g279300
SBS Chr2 27781371 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 34997188 T-C Hetero INTERGENIC
SBS Chr2 35902638 T-A Hetero INTERGENIC
SBS Chr3 17258033 C-G Homo INTERGENIC
SBS Chr3 20807826 C-T Hetero INTERGENIC
SBS Chr3 22635731 C-T Hetero INTERGENIC
SBS Chr3 26733301 A-G Homo INTRON
SBS Chr4 7970575 G-T Hetero INTERGENIC
SBS Chr5 8332199 C-T Hetero INTERGENIC
SBS Chr5 13417908 C-T Hetero INTERGENIC
SBS Chr5 26552978 G-A Hetero INTERGENIC
SBS Chr6 15104946 G-A Homo INTERGENIC
SBS Chr7 9982507 C-A Hetero INTERGENIC
SBS Chr7 10259889 G-A Hetero INTERGENIC
SBS Chr7 11052597 G-A Hetero INTERGENIC
SBS Chr7 11431797 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g106500
SBS Chr7 14463203 T-C Hetero INTERGENIC
SBS Chr9 670184 A-G Homo INTERGENIC
SBS Chr9 17010460 C-T Hetero INTERGENIC
SBS Chr10 1888345 A-T Hetero INTERGENIC
SBS Chr10 2610308 C-T Homo INTRON
SBS Chr10 5295336 C-G Hetero INTERGENIC
SBS Chr11 18053142 G-T Hetero INTERGENIC
SBS Chr11 20780818 C-T Hetero INTERGENIC
SBS Chr11 24383902 G-C Hetero INTERGENIC
SBS Chr11 28660534 C-T Hetero INTERGENIC
SBS Chr11 29342997 A-C Hetero INTERGENIC
SBS Chr12 6190195 G-A Hetero INTERGENIC
SBS Chr12 13852000 C-T Homo INTERGENIC
SBS Chr12 16012869 G-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 6227209 6227210 1
Deletion Chr9 6880918 6880919 1
Deletion Chr6 7755001 7970000 214999 35
Deletion Chr9 8386459 8386585 126
Deletion Chr11 11296159 11296160 1
Deletion Chr8 13107594 13107607 13
Deletion Chr8 13855736 13855743 7
Deletion Chr6 15290870 15290871 1
Deletion Chr7 16901001 16912000 10999
Deletion Chr4 23178269 23178272 3
Deletion Chr1 23843244 23843248 4
Deletion Chr5 23948140 23948145 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11044326 11044329 2
Insertion Chr10 22635617 22635622 4
Insertion Chr12 16382514 16382516 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7063303 Chr5 23250462 OsKitaake07g080100
Translocation Chr7 7088815 Chr5 23250437

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4890684	A-G	Homo	INTERGENIC
SBS	Chr1	16054312	T-G	Hetero	INTERGENIC
SBS	Chr2	7948616	G-C	Hetero	INTERGENIC
SBS	Chr2	26756755	C-T	Hetero	INTRON
SBS	Chr2	27540601	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g276900
SBS	Chr2	27781370	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g279300
SBS	Chr2	27781371	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34997188	T-C	Hetero	INTERGENIC
SBS	Chr2	35902638	T-A	Hetero	INTERGENIC
SBS	Chr3	17258033	C-G	Homo	INTERGENIC
SBS	Chr3	20807826	C-T	Hetero	INTERGENIC
SBS	Chr3	22635731	C-T	Hetero	INTERGENIC
SBS	Chr3	26733301	A-G	Homo	INTRON
SBS	Chr4	7970575	G-T	Hetero	INTERGENIC
SBS	Chr5	8332199	C-T	Hetero	INTERGENIC
SBS	Chr5	13417908	C-T	Hetero	INTERGENIC
SBS	Chr5	26552978	G-A	Hetero	INTERGENIC
SBS	Chr6	15104946	G-A	Homo	INTERGENIC
SBS	Chr7	9982507	C-A	Hetero	INTERGENIC
SBS	Chr7	10259889	G-A	Hetero	INTERGENIC
SBS	Chr7	11052597	G-A	Hetero	INTERGENIC
SBS	Chr7	11431797	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g106500
SBS	Chr7	14463203	T-C	Hetero	INTERGENIC
SBS	Chr9	670184	A-G	Homo	INTERGENIC
SBS	Chr9	17010460	C-T	Hetero	INTERGENIC
SBS	Chr10	1888345	A-T	Hetero	INTERGENIC
SBS	Chr10	2610308	C-T	Homo	INTRON
SBS	Chr10	5295336	C-G	Hetero	INTERGENIC
SBS	Chr11	18053142	G-T	Hetero	INTERGENIC
SBS	Chr11	20780818	C-T	Hetero	INTERGENIC
SBS	Chr11	24383902	G-C	Hetero	INTERGENIC
SBS	Chr11	28660534	C-T	Hetero	INTERGENIC
SBS	Chr11	29342997	A-C	Hetero	INTERGENIC
SBS	Chr12	6190195	G-A	Hetero	INTERGENIC
SBS	Chr12	13852000	C-T	Homo	INTERGENIC
SBS	Chr12	16012869	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	6227209	6227210	1
Deletion	Chr9	6880918	6880919	1
Deletion	Chr6	7755001	7970000	214999	35
Deletion	Chr9	8386459	8386585	126
Deletion	Chr11	11296159	11296160	1
Deletion	Chr8	13107594	13107607	13
Deletion	Chr8	13855736	13855743	7
Deletion	Chr6	15290870	15290871	1
Deletion	Chr7	16901001	16912000	10999
Deletion	Chr4	23178269	23178272	3
Deletion	Chr1	23843244	23843248	4
Deletion	Chr5	23948140	23948145	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	7063303	Chr5	23250462	OsKitaake07g080100
Translocation	Chr7	7088815	Chr5	23250437

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes