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Mutant Information

Mutant Name	FN1718-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1718-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 10406980 G-A Hetero INTERGENIC
SBS Chr1 11055945 T-G Hetero INTERGENIC
SBS Chr1 25166937 G-A Hetero INTERGENIC
SBS Chr1 25905406 A-T Homo INTERGENIC
SBS Chr1 43777748 A-G Hetero SPLICE_SITE_REGION
SBS Chr2 3316585 A-G Hetero START_GAINED
SBS Chr2 9271528 T-C Hetero INTERGENIC
SBS Chr2 9506914 G-A Hetero INTERGENIC
SBS Chr2 19480898 C-T Homo INTERGENIC
SBS Chr3 497376 C-T Hetero INTERGENIC
SBS Chr3 21175094 A-T Homo INTRON
SBS Chr4 18075437 C-T Homo INTERGENIC
SBS Chr4 19933513 G-A Hetero INTERGENIC
SBS Chr4 20246077 A-G Homo INTERGENIC
SBS Chr4 20246086 A-G Homo INTERGENIC
SBS Chr5 6839026 C-T Homo INTERGENIC
SBS Chr5 20075267 G-A Hetero INTERGENIC
SBS Chr5 22354163 A-C Homo INTERGENIC
SBS Chr6 133220 T-C Hetero INTERGENIC
SBS Chr6 3246345 G-A Hetero INTRON
SBS Chr6 15166482 A-T Hetero INTRON
SBS Chr6 22902816 C-G Hetero INTERGENIC
SBS Chr6 28727642 G-A Homo INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 11503608 C-G Hetero INTRON
SBS Chr7 12985635 G-T Hetero INTERGENIC
SBS Chr7 13264366 C-T Hetero INTRON
SBS Chr7 14100369 C-T Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 28520052 G-A Homo INTERGENIC
SBS Chr8 319804 A-T Homo INTERGENIC
SBS Chr8 5911411 T-C Homo INTERGENIC
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 22001627 T-A Homo INTERGENIC
SBS Chr8 22120575 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g168500
SBS Chr9 22501437 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g204900
SBS Chr10 10001170 G-A Hetero INTERGENIC
SBS Chr11 21182530 G-T Hetero INTERGENIC
SBS Chr12 12891149 T-C Hetero INTERGENIC
SBS Chr12 13129643 G-A Hetero INTERGENIC
SBS Chr12 21256029 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1650766 1650768 2
Deletion Chr5 3928442 3928444 2
Deletion Chr5 8723188 8723191 3
Deletion Chr7 10370651 10370654 3
Deletion Chr5 13318626 13318629 3
Deletion Chr8 13915933 13915934 1
Deletion Chr3 14491993 14491995 2
Deletion Chr6 16695031 16695033 2
Deletion Chr6 18055398 18055410 12
Deletion Chr3 19184037 19184040 3
Deletion Chr9 19997971 19997972 1
Deletion Chr5 20243045 20243055 10
Deletion Chr9 20398152 20398155 3 OsKitaake09g171700
Deletion Chr6 24879001 24990000 110999 6

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23267785 23267788 2
Insertion Chr5 4913987 4913991 3
Insertion Chr7 26091602 26091605 2
Insertion Chr8 23896996 23896999 2
Insertion Chr9 4671009 4671012 2
Insertion Chr10 11954907 11954910 2
Insertion Chr12 19542545 19542550 4

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 59056 Chr11 70851

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	10406980	G-A	Hetero	INTERGENIC
SBS	Chr1	11055945	T-G	Hetero	INTERGENIC
SBS	Chr1	25166937	G-A	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Homo	INTERGENIC
SBS	Chr1	43777748	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr2	3316585	A-G	Hetero	START_GAINED
SBS	Chr2	9271528	T-C	Hetero	INTERGENIC
SBS	Chr2	9506914	G-A	Hetero	INTERGENIC
SBS	Chr2	19480898	C-T	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Hetero	INTERGENIC
SBS	Chr3	21175094	A-T	Homo	INTRON
SBS	Chr4	18075437	C-T	Homo	INTERGENIC
SBS	Chr4	19933513	G-A	Hetero	INTERGENIC
SBS	Chr4	20246077	A-G	Homo	INTERGENIC
SBS	Chr4	20246086	A-G	Homo	INTERGENIC
SBS	Chr5	6839026	C-T	Homo	INTERGENIC
SBS	Chr5	20075267	G-A	Hetero	INTERGENIC
SBS	Chr5	22354163	A-C	Homo	INTERGENIC
SBS	Chr6	133220	T-C	Hetero	INTERGENIC
SBS	Chr6	3246345	G-A	Hetero	INTRON
SBS	Chr6	15166482	A-T	Hetero	INTRON
SBS	Chr6	22902816	C-G	Hetero	INTERGENIC
SBS	Chr6	28727642	G-A	Homo	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	11503608	C-G	Hetero	INTRON
SBS	Chr7	12985635	G-T	Hetero	INTERGENIC
SBS	Chr7	13264366	C-T	Hetero	INTRON
SBS	Chr7	14100369	C-T	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	28520052	G-A	Homo	INTERGENIC
SBS	Chr8	319804	A-T	Homo	INTERGENIC
SBS	Chr8	5911411	T-C	Homo	INTERGENIC
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	22001627	T-A	Homo	INTERGENIC
SBS	Chr8	22120575	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g168500
SBS	Chr9	22501437	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g204900
SBS	Chr10	10001170	G-A	Hetero	INTERGENIC
SBS	Chr11	21182530	G-T	Hetero	INTERGENIC
SBS	Chr12	12891149	T-C	Hetero	INTERGENIC
SBS	Chr12	13129643	G-A	Hetero	INTERGENIC
SBS	Chr12	21256029	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1650766	1650768	2
Deletion	Chr5	3928442	3928444	2
Deletion	Chr5	8723188	8723191	3
Deletion	Chr7	10370651	10370654	3
Deletion	Chr5	13318626	13318629	3
Deletion	Chr8	13915933	13915934	1
Deletion	Chr3	14491993	14491995	2
Deletion	Chr6	16695031	16695033	2
Deletion	Chr6	18055398	18055410	12
Deletion	Chr3	19184037	19184040	3
Deletion	Chr9	19997971	19997972	1
Deletion	Chr5	20243045	20243055	10
Deletion	Chr9	20398152	20398155	3	OsKitaake09g171700
Deletion	Chr6	24879001	24990000	110999	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	59056	Chr11	70851

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes