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Mutant Information

Mutant Name	FN1719-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1719-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 5523914 T-A Hetero INTERGENIC
SBS Chr1 5804557 T-C Hetero INTERGENIC
SBS Chr1 7737942 A-G Hetero INTERGENIC
SBS Chr1 19786923 T-A Hetero INTERGENIC
SBS Chr1 28257678 C-G Homo INTERGENIC
SBS Chr1 37188549 A-T Homo INTERGENIC
SBS Chr2 21411151 T-C Hetero INTRON
SBS Chr2 33007336 A-G Hetero INTERGENIC
SBS Chr3 31908682 G-A Homo INTERGENIC
SBS Chr3 32438935 C-A Hetero INTERGENIC
SBS Chr4 3693285 A-T Hetero INTERGENIC
SBS Chr5 14083488 A-G Homo INTERGENIC
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr9 4585164 C-A Hetero INTERGENIC
SBS Chr9 15740915 T-C Homo INTRON
SBS Chr10 2261258 C-T Homo UTR_3_PRIME
SBS Chr11 7161687 C-G Hetero INTERGENIC
SBS Chr11 7843544 G-A Hetero START_GAINED
SBS Chr11 12934977 C-T Homo INTERGENIC
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 18362121 G-A Hetero INTERGENIC
SBS Chr11 19968400 T-A Hetero INTERGENIC
SBS Chr12 20522 T-A Hetero INTRON
SBS Chr12 7902292 G-A Homo INTERGENIC
SBS Chr12 13488384 G-C Homo INTRON
SBS Chr12 14118258 C-T Homo SYNONYMOUS_CODING

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 316100 316113 13
Deletion Chr3 810373 810375 2
Deletion Chr7 6526895 6526896 1
Deletion Chr4 8347132 8347133 1
Deletion Chr2 10285064 10285069 5
Deletion Chr6 12683962 12683964 2
Deletion Chr7 12729784 12729785 1
Deletion Chr5 17035050 17035059 9
Deletion Chr6 17555512 17555513 1
Deletion Chr6 19474967 19474973 6
Deletion Chr6 22655521 22655525 4
Deletion Chr4 23587030 23587038 8
Deletion Chr7 24121099 24121100 1
Deletion Chr12 24389001 24432000 42999 7
Deletion Chr4 27973514 27973530 16
Deletion Chr1 34276452 34276453 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 238546 238549 2
Insertion Chr1 18946514 18946517 2
Insertion Chr8 16521293 16521296 2
Insertion Chr2 20834599 20834602 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 29069094 29121089
Inversion Chr2 29069108 29121099
Inversion Chr1 31432588 31761193 OsKitaake01g315400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11145336 Chr3 7975751
Translocation Chr11 11145342 Chr3 7975529
Translocation Chr12 15923501 Chr4 32389980 OsKitaake04g258700
Translocation Chr12 15923506 Chr4 32389508 OsKitaake04g258700
Translocation Chr5 27557995 Chr3 7584216

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	5523914	T-A	Hetero	INTERGENIC
SBS	Chr1	5804557	T-C	Hetero	INTERGENIC
SBS	Chr1	7737942	A-G	Hetero	INTERGENIC
SBS	Chr1	19786923	T-A	Hetero	INTERGENIC
SBS	Chr1	28257678	C-G	Homo	INTERGENIC
SBS	Chr1	37188549	A-T	Homo	INTERGENIC
SBS	Chr2	21411151	T-C	Hetero	INTRON
SBS	Chr2	33007336	A-G	Hetero	INTERGENIC
SBS	Chr3	31908682	G-A	Homo	INTERGENIC
SBS	Chr3	32438935	C-A	Hetero	INTERGENIC
SBS	Chr4	3693285	A-T	Hetero	INTERGENIC
SBS	Chr5	14083488	A-G	Homo	INTERGENIC
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr9	4585164	C-A	Hetero	INTERGENIC
SBS	Chr9	15740915	T-C	Homo	INTRON
SBS	Chr10	2261258	C-T	Homo	UTR_3_PRIME
SBS	Chr11	7161687	C-G	Hetero	INTERGENIC
SBS	Chr11	7843544	G-A	Hetero	START_GAINED
SBS	Chr11	12934977	C-T	Homo	INTERGENIC
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	18362121	G-A	Hetero	INTERGENIC
SBS	Chr11	19968400	T-A	Hetero	INTERGENIC
SBS	Chr12	20522	T-A	Hetero	INTRON
SBS	Chr12	7902292	G-A	Homo	INTERGENIC
SBS	Chr12	13488384	G-C	Homo	INTRON
SBS	Chr12	14118258	C-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	316100	316113	13
Deletion	Chr3	810373	810375	2
Deletion	Chr7	6526895	6526896	1
Deletion	Chr4	8347132	8347133	1
Deletion	Chr2	10285064	10285069	5
Deletion	Chr6	12683962	12683964	2
Deletion	Chr7	12729784	12729785	1
Deletion	Chr5	17035050	17035059	9
Deletion	Chr6	17555512	17555513	1
Deletion	Chr6	19474967	19474973	6
Deletion	Chr6	22655521	22655525	4
Deletion	Chr4	23587030	23587038	8
Deletion	Chr7	24121099	24121100	1
Deletion	Chr12	24389001	24432000	42999	7
Deletion	Chr4	27973514	27973530	16
Deletion	Chr1	34276452	34276453	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	29069094	29121089
Inversion	Chr2	29069108	29121099
Inversion	Chr1	31432588	31761193	OsKitaake01g315400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes