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Mutant Information

Mutant Name	FN1720-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1720-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11619293 C-G Homo INTERGENIC
SBS Chr1 26979646 G-T Homo INTRON
SBS Chr1 36796971 C-T Hetero INTERGENIC
SBS Chr2 431174 G-A Hetero INTERGENIC
SBS Chr2 19891582 C-T Hetero INTERGENIC
SBS Chr2 26876528 A-G Hetero INTRON
SBS Chr3 15607482 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g200500
SBS Chr3 21382953 A-G Hetero INTRON
SBS Chr3 24675470 G-A Hetero INTERGENIC
SBS Chr3 35501191 C-T Hetero INTERGENIC
SBS Chr4 6920746 T-G Homo INTERGENIC
SBS Chr4 8050582 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g042100
SBS Chr4 17231029 G-A Hetero INTERGENIC
SBS Chr4 19648540 C-T Hetero INTERGENIC
SBS Chr6 20232442 G-A Homo INTERGENIC
SBS Chr6 22442414 G-A Hetero INTERGENIC
SBS Chr7 6233756 C-G Homo INTERGENIC
SBS Chr7 8748039 C-T Homo INTERGENIC
SBS Chr7 20060629 T-C Homo INTERGENIC
SBS Chr7 21883167 C-T Homo INTERGENIC
SBS Chr9 3342135 C-T Hetero INTERGENIC
SBS Chr9 19053768 A-T Hetero INTERGENIC
SBS Chr10 21693378 G-A Homo INTRON
SBS Chr11 13080099 T-C Homo INTERGENIC
SBS Chr11 13962708 G-A Homo INTERGENIC
SBS Chr11 18542380 G-A Hetero INTERGENIC
SBS Chr11 24253786 C-T Homo INTERGENIC
SBS Chr12 2793468 A-T Hetero INTERGENIC
SBS Chr12 5585476 A-T Homo INTERGENIC
SBS Chr12 12106526 C-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 639135 639137 2
Deletion Chr11 5631079 5631092 13 OsKitaake11g069000
Deletion Chr2 10155284 10155285 1 OsKitaake02g121901
Deletion Chr4 12351046 12351053 7
Deletion Chr7 12374139 12374142 3
Deletion Chr4 12563095 12563096 1
Deletion Chr2 12572782 12572787 5
Deletion Chr11 12671141 12671142 1
Deletion Chr6 13036750 13036778 28
Deletion Chr7 14225129 14225142 13
Deletion Chr4 15433708 15433710 2
Deletion Chr4 15737334 15737344 10
Deletion Chr7 16343680 16343688 8
Deletion Chr6 18105524 18105527 3
Deletion Chr11 18517847 18517848 1
Deletion Chr12 24769818 24769823 5
Deletion Chr8 25784798 25784811 13
Deletion Chr6 29695001 29893000 197999 33
Deletion Chr3 31304495 31304497 2
Deletion Chr1 34647065 34647066 1 OsKitaake01g363700

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9520563 9520566 2
Insertion Chr11 283080 283082 1
Insertion Chr12 16602304 16602306 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11619293	C-G	Homo	INTERGENIC
SBS	Chr1	26979646	G-T	Homo	INTRON
SBS	Chr1	36796971	C-T	Hetero	INTERGENIC
SBS	Chr2	431174	G-A	Hetero	INTERGENIC
SBS	Chr2	19891582	C-T	Hetero	INTERGENIC
SBS	Chr2	26876528	A-G	Hetero	INTRON
SBS	Chr3	15607482	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g200500
SBS	Chr3	21382953	A-G	Hetero	INTRON
SBS	Chr3	24675470	G-A	Hetero	INTERGENIC
SBS	Chr3	35501191	C-T	Hetero	INTERGENIC
SBS	Chr4	6920746	T-G	Homo	INTERGENIC
SBS	Chr4	8050582	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g042100
SBS	Chr4	17231029	G-A	Hetero	INTERGENIC
SBS	Chr4	19648540	C-T	Hetero	INTERGENIC
SBS	Chr6	20232442	G-A	Homo	INTERGENIC
SBS	Chr6	22442414	G-A	Hetero	INTERGENIC
SBS	Chr7	6233756	C-G	Homo	INTERGENIC
SBS	Chr7	8748039	C-T	Homo	INTERGENIC
SBS	Chr7	20060629	T-C	Homo	INTERGENIC
SBS	Chr7	21883167	C-T	Homo	INTERGENIC
SBS	Chr9	3342135	C-T	Hetero	INTERGENIC
SBS	Chr9	19053768	A-T	Hetero	INTERGENIC
SBS	Chr10	21693378	G-A	Homo	INTRON
SBS	Chr11	13080099	T-C	Homo	INTERGENIC
SBS	Chr11	13962708	G-A	Homo	INTERGENIC
SBS	Chr11	18542380	G-A	Hetero	INTERGENIC
SBS	Chr11	24253786	C-T	Homo	INTERGENIC
SBS	Chr12	2793468	A-T	Hetero	INTERGENIC
SBS	Chr12	5585476	A-T	Homo	INTERGENIC
SBS	Chr12	12106526	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	639135	639137	2
Deletion	Chr11	5631079	5631092	13	OsKitaake11g069000
Deletion	Chr2	10155284	10155285	1	OsKitaake02g121901
Deletion	Chr4	12351046	12351053	7
Deletion	Chr7	12374139	12374142	3
Deletion	Chr4	12563095	12563096	1
Deletion	Chr2	12572782	12572787	5
Deletion	Chr11	12671141	12671142	1
Deletion	Chr6	13036750	13036778	28
Deletion	Chr7	14225129	14225142	13
Deletion	Chr4	15433708	15433710	2
Deletion	Chr4	15737334	15737344	10
Deletion	Chr7	16343680	16343688	8
Deletion	Chr6	18105524	18105527	3
Deletion	Chr11	18517847	18517848	1
Deletion	Chr12	24769818	24769823	5
Deletion	Chr8	25784798	25784811	13
Deletion	Chr6	29695001	29893000	197999	33
Deletion	Chr3	31304495	31304497	2
Deletion	Chr1	34647065	34647066	1	OsKitaake01g363700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes