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Mutant Information

Mutant Name	FN1721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1721-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1144791 G-A Hetero INTERGENIC
SBS Chr1 2278964 A-T Hetero INTERGENIC
SBS Chr1 7302977 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 12419392 T-C Homo INTRON
SBS Chr1 23143277 A-G Homo INTERGENIC
SBS Chr1 24370450 C-T Hetero INTRON
SBS Chr1 26688411 C-T Homo INTERGENIC
SBS Chr1 29486049 A-T Hetero INTERGENIC
SBS Chr1 35501112 T-C Hetero INTERGENIC
SBS Chr2 16001221 C-T Hetero INTERGENIC
SBS Chr2 26743503 T-C Hetero INTERGENIC
SBS Chr2 28715870 G-A Hetero INTERGENIC
SBS Chr3 1686400 G-A Homo INTRON
SBS Chr3 1686402 G-A Homo INTRON
SBS Chr3 13152804 T-C Homo INTERGENIC
SBS Chr4 5906881 T-A Homo INTERGENIC
SBS Chr4 21618118 T-C Hetero UTR_3_PRIME
SBS Chr4 24221252 T-A Hetero INTERGENIC
SBS Chr5 409317 G-C Hetero INTERGENIC
SBS Chr5 21007282 G-A Homo INTERGENIC
SBS Chr6 5578982 A-G Homo INTERGENIC
SBS Chr6 28970935 C-T Hetero INTERGENIC
SBS Chr7 9553824 T-A Homo INTERGENIC
SBS Chr7 10391173 C-T Homo INTERGENIC
SBS Chr7 17142628 G-A Homo INTERGENIC
SBS Chr7 22591710 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g193100
SBS Chr8 631708 G-A Homo INTERGENIC
SBS Chr9 10230242 G-A Hetero INTERGENIC
SBS Chr9 13180792 C-A Hetero INTERGENIC
SBS Chr10 2169954 A-G Homo INTERGENIC
SBS Chr10 18140985 G-A Homo INTERGENIC
SBS Chr11 12489969 C-A Hetero INTERGENIC
SBS Chr11 19964902 T-C Homo INTERGENIC
SBS Chr11 24568327 G-A Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1657635 1657637 2
Deletion Chr10 2550117 2550118 1
Deletion Chr10 2867245 2867247 2
Deletion Chr8 3569135 3569141 6
Deletion Chr10 3973623 3973624 1 OsKitaake10g030000
Deletion Chr10 5048893 5048900 7
Deletion Chr6 9161727 9161728 1
Deletion Chr10 10338590 10338712 122
Deletion Chr9 10371512 10371514 2
Deletion Chr7 11041412 11041413 1
Deletion Chr11 13584823 13584824 1
Deletion Chr1 14437926 14437927 1
Deletion Chr12 14813016 14813028 12
Deletion Chr3 16150627 16150628 1
Deletion Chr8 24163661 24163662 1
Deletion Chr11 29681493 29681498 5
Deletion Chr1 30404330 30404333 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 15031088 Chr4 259791 OsKitaake11g123300
Translocation Chr11 15031089 Chr4 29817878 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1144791	G-A	Hetero	INTERGENIC
SBS	Chr1	2278964	A-T	Hetero	INTERGENIC
SBS	Chr1	7302977	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	12419392	T-C	Homo	INTRON
SBS	Chr1	23143277	A-G	Homo	INTERGENIC
SBS	Chr1	24370450	C-T	Hetero	INTRON
SBS	Chr1	26688411	C-T	Homo	INTERGENIC
SBS	Chr1	29486049	A-T	Hetero	INTERGENIC
SBS	Chr1	35501112	T-C	Hetero	INTERGENIC
SBS	Chr2	16001221	C-T	Hetero	INTERGENIC
SBS	Chr2	26743503	T-C	Hetero	INTERGENIC
SBS	Chr2	28715870	G-A	Hetero	INTERGENIC
SBS	Chr3	1686400	G-A	Homo	INTRON
SBS	Chr3	1686402	G-A	Homo	INTRON
SBS	Chr3	13152804	T-C	Homo	INTERGENIC
SBS	Chr4	5906881	T-A	Homo	INTERGENIC
SBS	Chr4	21618118	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	24221252	T-A	Hetero	INTERGENIC
SBS	Chr5	409317	G-C	Hetero	INTERGENIC
SBS	Chr5	21007282	G-A	Homo	INTERGENIC
SBS	Chr6	5578982	A-G	Homo	INTERGENIC
SBS	Chr6	28970935	C-T	Hetero	INTERGENIC
SBS	Chr7	9553824	T-A	Homo	INTERGENIC
SBS	Chr7	10391173	C-T	Homo	INTERGENIC
SBS	Chr7	17142628	G-A	Homo	INTERGENIC
SBS	Chr7	22591710	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g193100
SBS	Chr8	631708	G-A	Homo	INTERGENIC
SBS	Chr9	10230242	G-A	Hetero	INTERGENIC
SBS	Chr9	13180792	C-A	Hetero	INTERGENIC
SBS	Chr10	2169954	A-G	Homo	INTERGENIC
SBS	Chr10	18140985	G-A	Homo	INTERGENIC
SBS	Chr11	12489969	C-A	Hetero	INTERGENIC
SBS	Chr11	19964902	T-C	Homo	INTERGENIC
SBS	Chr11	24568327	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1657635	1657637	2
Deletion	Chr10	2550117	2550118	1
Deletion	Chr10	2867245	2867247	2
Deletion	Chr8	3569135	3569141	6
Deletion	Chr10	3973623	3973624	1	OsKitaake10g030000
Deletion	Chr10	5048893	5048900	7
Deletion	Chr6	9161727	9161728	1
Deletion	Chr10	10338590	10338712	122
Deletion	Chr9	10371512	10371514	2
Deletion	Chr7	11041412	11041413	1
Deletion	Chr11	13584823	13584824	1
Deletion	Chr1	14437926	14437927	1
Deletion	Chr12	14813016	14813028	12
Deletion	Chr3	16150627	16150628	1
Deletion	Chr8	24163661	24163662	1
Deletion	Chr11	29681493	29681498	5
Deletion	Chr1	30404330	30404333	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	15031088	Chr4	259791	OsKitaake11g123300
Translocation	Chr11	15031089	Chr4	29817878	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes