Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1722-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1722-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13388611 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23821661 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1209611 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6118047 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 7756372 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 14534001 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17561403 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23525876 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36969720 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 1431521 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 3490871 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12616189 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3720972 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9120140 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12076188 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20110912 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20110914 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 2059595 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16399876 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8476311 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 8990916 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23602953 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 5353272 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 2079525 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 4876971 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13116783 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13116794 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 985443 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 6416857 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15847992 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 28814201 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 4910745 | 4910746 | 1 | |
| Deletion | Chr6 | 8797330 | 8797332 | 2 | |
| Deletion | Chr12 | 9637463 | 9637470 | 7 | OsKitaake12g093000 |
| Deletion | Chr12 | 9728001 | 9754000 | 25999 | |
| Deletion | Chr6 | 9763421 | 9763430 | 9 | |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr7 | 13722001 | 13730000 | 7999 | |
| Deletion | Chr12 | 14130947 | 14130949 | 2 | |
| Deletion | Chr5 | 17947913 | 17947915 | 2 | |
| Deletion | Chr4 | 18361034 | 18361039 | 5 | |
| Deletion | Chr8 | 18700085 | 18700087 | 2 | |
| Deletion | Chr2 | 21823577 | 21823578 | 1 | OsKitaake02g211700 |
| Deletion | Chr11 | 23114537 | 23114538 | 1 | |
| Deletion | Chr6 | 25477485 | 25477486 | 1 | OsKitaake06g226100 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 20573403 | 20573406 | 2 | |
| Insertion | Chr7 | 21000667 | 21000671 | 3 | |
| Insertion | Chr8 | 13486517 | 13486520 | 2 | |
| Insertion | Chr1 | 17268426 | 17268428 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 2352290 | 2576951 | OsKitaake06g034700 |
| Inversion | Chr6 | 2352302 | 2577048 | OsKitaake06g034700 |
| Inversion | Chr2 | 20896819 | 21157930 | OsKitaake02g204000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6468440 | Chr2 | 21340767 | |
| Translocation | Chr9 | 6480733 | Chr2 | 21159861 | OsKitaake02g204000 |