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Mutant Information

Mutant Name	FN1723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1723-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3527782 T-C Hetero INTERGENIC
SBS Chr1 3527813 G-T Hetero INTERGENIC
SBS Chr2 4300085 G-A Homo INTERGENIC
SBS Chr2 5951345 G-A Hetero INTERGENIC
SBS Chr2 7481684 A-G Hetero INTERGENIC
SBS Chr2 30233840 C-T Homo INTERGENIC
SBS Chr3 2148397 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g030600
SBS Chr3 11253473 C-T Hetero INTERGENIC
SBS Chr3 12687488 G-A Hetero INTERGENIC
SBS Chr3 32963366 G-T Hetero INTRON
SBS Chr4 2416933 G-T Hetero INTERGENIC
SBS Chr4 23940379 G-A Hetero INTERGENIC
SBS Chr4 24592708 G-A Hetero INTERGENIC
SBS Chr4 28089636 G-A Hetero INTERGENIC
SBS Chr5 4444355 G-T Hetero INTERGENIC
SBS Chr5 5456487 C-A Hetero INTERGENIC
SBS Chr5 11624901 G-A Hetero INTERGENIC
SBS Chr5 28899043 T-C Hetero INTRON
SBS Chr6 19832034 C-T Homo INTERGENIC
SBS Chr7 6424273 T-C Hetero INTERGENIC
SBS Chr7 21873772 C-T Hetero INTERGENIC
SBS Chr7 25201204 C-T Hetero UTR_3_PRIME
SBS Chr7 25201205 A-G Hetero UTR_3_PRIME
SBS Chr7 28257386 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g267100
SBS Chr8 5913842 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g064300
SBS Chr8 15787761 G-A Homo INTERGENIC
SBS Chr9 676525 T-G Homo INTERGENIC
SBS Chr10 17965523 T-C Hetero UTR_5_PRIME
SBS Chr11 7732391 G-T Homo INTERGENIC
SBS Chr11 13704504 G-A Hetero INTERGENIC
SBS Chr11 14958751 G-A Hetero INTERGENIC
SBS Chr11 14958752 G-A Hetero INTERGENIC
SBS Chr11 17198945 A-G Hetero UTR_3_PRIME
SBS Chr12 7206058 A-C Hetero INTRON
SBS Chr12 18165328 A-G Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 568820 568828 8
Deletion Chr9 1892294 1892313 19
Deletion Chr6 2825759 2825760 1 OsKitaake06g038550
Deletion Chr5 5721778 5721779 1
Deletion Chr7 5734572 5734574 2
Deletion Chr9 6103904 6103905 1
Deletion Chr7 7598218 7598220 2
Deletion Chr7 9294830 9294831 1
Deletion Chr4 9393248 9393251 3
Deletion Chr2 13326633 13326636 3
Deletion Chr6 13629630 13629634 4
Deletion Chr9 14282365 14282367 2
Deletion Chr3 17288530 17288531 1 OsKitaake03g213650
Deletion Chr5 19307639 19307643 4 OsKitaake05g151600
Deletion Chr8 20773109 20773111 2
Deletion Chr5 21564444 21564449 5
Deletion Chr3 22127452 22127455 3
Deletion Chr1 25204551 25204554 3 OsKitaake01g243800
Deletion Chr3 27116641 27116653 12
Deletion Chr6 27205001 27331000 125999 11
Deletion Chr1 28455087 28455089 2
Deletion Chr2 28754038 28754045 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1347496 1347499 2
Insertion Chr2 24870731 24870734 2
Insertion Chr3 14586940 14586943 2
Insertion Chr8 26571048 26571051 2
Insertion Chr9 9189962 9189965 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 9996344 Chr1 25318943 OsKitaake01g245201
Translocation Chr5 9996358 Chr1 25320258 OsKitaake01g245201
Translocation Chr9 11114657 Chr1 28810736
Translocation Chr9 11114879 Chr1 28810741
Translocation Chr6 27329651 Chr5 5701319
Translocation Chr6 27330181 Chr5 5701290 OsKitaake06g246200
Translocation Chr4 34226107 Chr3 22179016 OsKitaake03g241635

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3527782	T-C	Hetero	INTERGENIC
SBS	Chr1	3527813	G-T	Hetero	INTERGENIC
SBS	Chr2	4300085	G-A	Homo	INTERGENIC
SBS	Chr2	5951345	G-A	Hetero	INTERGENIC
SBS	Chr2	7481684	A-G	Hetero	INTERGENIC
SBS	Chr2	30233840	C-T	Homo	INTERGENIC
SBS	Chr3	2148397	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g030600
SBS	Chr3	11253473	C-T	Hetero	INTERGENIC
SBS	Chr3	12687488	G-A	Hetero	INTERGENIC
SBS	Chr3	32963366	G-T	Hetero	INTRON
SBS	Chr4	2416933	G-T	Hetero	INTERGENIC
SBS	Chr4	23940379	G-A	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Hetero	INTERGENIC
SBS	Chr4	28089636	G-A	Hetero	INTERGENIC
SBS	Chr5	4444355	G-T	Hetero	INTERGENIC
SBS	Chr5	5456487	C-A	Hetero	INTERGENIC
SBS	Chr5	11624901	G-A	Hetero	INTERGENIC
SBS	Chr5	28899043	T-C	Hetero	INTRON
SBS	Chr6	19832034	C-T	Homo	INTERGENIC
SBS	Chr7	6424273	T-C	Hetero	INTERGENIC
SBS	Chr7	21873772	C-T	Hetero	INTERGENIC
SBS	Chr7	25201204	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	25201205	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	28257386	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g267100
SBS	Chr8	5913842	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g064300
SBS	Chr8	15787761	G-A	Homo	INTERGENIC
SBS	Chr9	676525	T-G	Homo	INTERGENIC
SBS	Chr10	17965523	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	7732391	G-T	Homo	INTERGENIC
SBS	Chr11	13704504	G-A	Hetero	INTERGENIC
SBS	Chr11	14958751	G-A	Hetero	INTERGENIC
SBS	Chr11	14958752	G-A	Hetero	INTERGENIC
SBS	Chr11	17198945	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	7206058	A-C	Hetero	INTRON
SBS	Chr12	18165328	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	568820	568828	8
Deletion	Chr9	1892294	1892313	19
Deletion	Chr6	2825759	2825760	1	OsKitaake06g038550
Deletion	Chr5	5721778	5721779	1
Deletion	Chr7	5734572	5734574	2
Deletion	Chr9	6103904	6103905	1
Deletion	Chr7	7598218	7598220	2
Deletion	Chr7	9294830	9294831	1
Deletion	Chr4	9393248	9393251	3
Deletion	Chr2	13326633	13326636	3
Deletion	Chr6	13629630	13629634	4
Deletion	Chr9	14282365	14282367	2
Deletion	Chr3	17288530	17288531	1	OsKitaake03g213650
Deletion	Chr5	19307639	19307643	4	OsKitaake05g151600
Deletion	Chr8	20773109	20773111	2
Deletion	Chr5	21564444	21564449	5
Deletion	Chr3	22127452	22127455	3
Deletion	Chr1	25204551	25204554	3	OsKitaake01g243800
Deletion	Chr3	27116641	27116653	12
Deletion	Chr6	27205001	27331000	125999	11
Deletion	Chr1	28455087	28455089	2
Deletion	Chr2	28754038	28754045	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	9996344	Chr1	25318943	OsKitaake01g245201
Translocation	Chr5	9996358	Chr1	25320258	OsKitaake01g245201
Translocation	Chr9	11114657	Chr1	28810736
Translocation	Chr9	11114879	Chr1	28810741
Translocation	Chr6	27329651	Chr5	5701319
Translocation	Chr6	27330181	Chr5	5701290	OsKitaake06g246200
Translocation	Chr4	34226107	Chr3	22179016	OsKitaake03g241635

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes