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Mutant Information

Mutant Name	FN1724-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1724-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4611945 T-C Hetero INTERGENIC
SBS Chr2 4605898 G-A Hetero INTERGENIC
SBS Chr2 6572469 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 31452032 T-C Homo INTERGENIC
SBS Chr2 31778234 T-C Hetero INTERGENIC
SBS Chr3 3206264 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g045300
SBS Chr3 13003187 T-C Homo INTERGENIC
SBS Chr3 18505061 C-T Homo INTERGENIC
SBS Chr3 21343739 C-T Homo INTERGENIC
SBS Chr3 30330404 A-T Hetero INTERGENIC
SBS Chr4 4778333 G-T Homo INTERGENIC
SBS Chr4 8511197 C-T Homo INTERGENIC
SBS Chr4 12748763 A-T Homo NON_SYNONYMOUS_CODING OsKitaake04g061000
SBS Chr4 26542936 G-A Hetero INTERGENIC
SBS Chr5 6476358 G-A Hetero INTERGENIC
SBS Chr5 7696928 G-T Hetero INTERGENIC
SBS Chr5 8545348 C-G Hetero INTERGENIC
SBS Chr5 11349434 C-G Hetero INTERGENIC
SBS Chr5 17722840 C-A Hetero INTERGENIC
SBS Chr5 21141620 T-A Hetero INTERGENIC
SBS Chr6 7372149 G-A Hetero UTR_3_PRIME
SBS Chr7 15742146 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g130300
SBS Chr8 20899036 T-C Homo INTERGENIC
SBS Chr9 5138024 G-A Hetero INTERGENIC
SBS Chr9 21898698 A-G Hetero INTERGENIC
SBS Chr10 2280998 T-C Hetero INTERGENIC
SBS Chr11 11041082 G-C Homo INTERGENIC
SBS Chr11 21652390 C-A Hetero INTERGENIC
SBS Chr11 25672579 C-T Hetero INTRON
SBS Chr12 22759101 A-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4817800 4817808 8
Deletion Chr3 14467833 14467852 19
Deletion Chr3 18593917 18593919 2
Deletion Chr5 22020100 22020108 8
Deletion Chr2 24659470 24659471 1
Deletion Chr4 27156520 27156521 1
Deletion Chr5 29108230 29108231 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 33591843 33591846 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 20702544 21060237 OsKitaake11g167100

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 2941253 Chr2 36652048 2
Translocation Chr12 3299214 Chr8 5522541
Translocation Chr12 3299221 Chr8 5524216
Translocation Chr12 22613545 Chr3 31179267 OsKitaake12g177800
Translocation Chr12 22613552 Chr3 31192431 OsKitaake12g177800
Translocation Chr7 22869634 Chr3 2940718 2
Translocation Chr6 27320411 Chr2 20708207
Translocation Chr4 36042993 Chr2 36640796 2
Translocation Chr4 36061506 Chr3 2941231 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4611945	T-C	Hetero	INTERGENIC
SBS	Chr2	4605898	G-A	Hetero	INTERGENIC
SBS	Chr2	6572469	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	31452032	T-C	Homo	INTERGENIC
SBS	Chr2	31778234	T-C	Hetero	INTERGENIC
SBS	Chr3	3206264	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g045300
SBS	Chr3	13003187	T-C	Homo	INTERGENIC
SBS	Chr3	18505061	C-T	Homo	INTERGENIC
SBS	Chr3	21343739	C-T	Homo	INTERGENIC
SBS	Chr3	30330404	A-T	Hetero	INTERGENIC
SBS	Chr4	4778333	G-T	Homo	INTERGENIC
SBS	Chr4	8511197	C-T	Homo	INTERGENIC
SBS	Chr4	12748763	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g061000
SBS	Chr4	26542936	G-A	Hetero	INTERGENIC
SBS	Chr5	6476358	G-A	Hetero	INTERGENIC
SBS	Chr5	7696928	G-T	Hetero	INTERGENIC
SBS	Chr5	8545348	C-G	Hetero	INTERGENIC
SBS	Chr5	11349434	C-G	Hetero	INTERGENIC
SBS	Chr5	17722840	C-A	Hetero	INTERGENIC
SBS	Chr5	21141620	T-A	Hetero	INTERGENIC
SBS	Chr6	7372149	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	15742146	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g130300
SBS	Chr8	20899036	T-C	Homo	INTERGENIC
SBS	Chr9	5138024	G-A	Hetero	INTERGENIC
SBS	Chr9	21898698	A-G	Hetero	INTERGENIC
SBS	Chr10	2280998	T-C	Hetero	INTERGENIC
SBS	Chr11	11041082	G-C	Homo	INTERGENIC
SBS	Chr11	21652390	C-A	Hetero	INTERGENIC
SBS	Chr11	25672579	C-T	Hetero	INTRON
SBS	Chr12	22759101	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4817800	4817808	8
Deletion	Chr3	14467833	14467852	19
Deletion	Chr3	18593917	18593919	2
Deletion	Chr5	22020100	22020108	8
Deletion	Chr2	24659470	24659471	1
Deletion	Chr4	27156520	27156521	1
Deletion	Chr5	29108230	29108231	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20702544	21060237	OsKitaake11g167100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes