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Mutant Information

Mutant Name	FN1725-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1725-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11883936 C-T Hetero INTERGENIC
SBS Chr1 33938513 T-C Hetero INTERGENIC
SBS Chr1 41141947 C-A Hetero INTERGENIC
SBS Chr2 5790570 C-A Hetero INTERGENIC
SBS Chr2 16472082 A-G Hetero INTERGENIC
SBS Chr2 17233036 C-A Hetero INTRON
SBS Chr2 19372547 G-A Hetero INTERGENIC
SBS Chr2 30858337 T-C Hetero INTRON
SBS Chr3 12512001 T-A Hetero INTERGENIC
SBS Chr3 13417080 T-C Hetero INTERGENIC
SBS Chr4 1599657 A-G Hetero INTERGENIC
SBS Chr4 15915373 G-A Hetero INTERGENIC
SBS Chr4 27067969 C-T Hetero INTERGENIC
SBS Chr5 2711810 G-A Hetero INTERGENIC
SBS Chr5 9409483 A-T Hetero INTRON
SBS Chr5 9861076 T-A Hetero INTRON
SBS Chr5 9861077 T-A Hetero INTRON
SBS Chr5 9861519 A-T Hetero INTRON
SBS Chr6 9487856 G-A Hetero INTERGENIC
SBS Chr6 16497599 A-G Hetero INTERGENIC
SBS Chr6 23213613 C-T Homo INTERGENIC
SBS Chr6 26580835 T-C Homo INTERGENIC
SBS Chr7 4777643 A-G Hetero INTERGENIC
SBS Chr7 6068899 G-A Hetero INTERGENIC
SBS Chr7 15132424 G-A Hetero INTERGENIC
SBS Chr7 28324696 T-C Hetero UTR_3_PRIME
SBS Chr8 6418100 T-C Hetero INTERGENIC
SBS Chr8 13246838 G-C Homo INTERGENIC
SBS Chr8 15471125 G-A Homo INTERGENIC
SBS Chr8 26521968 C-T Homo INTERGENIC
SBS Chr9 20621419 G-A Hetero INTERGENIC
SBS Chr10 1479565 A-T Hetero INTERGENIC
SBS Chr10 5909895 C-T Hetero INTRON
SBS Chr10 20927931 C-A Hetero INTERGENIC
SBS Chr10 22908481 A-T Hetero INTERGENIC
SBS Chr11 6362870 A-T Hetero INTERGENIC
SBS Chr11 27460454 G-A Homo INTERGENIC
SBS Chr12 19646694 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g147683

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 68781 68782 1
Deletion Chr10 723424 723434 10
Deletion Chr12 1528866 1528869 3
Deletion Chr5 2300909 2300911 2
Deletion Chr3 2336166 2336169 3 OsKitaake03g033300
Deletion Chr6 2445570 2445575 5
Deletion Chr6 3779185 3779186 1
Deletion Chr3 9584535 9584536 1
Deletion Chr5 10245100 10245103 3
Deletion Chr10 12074791 12074792 1 OsKitaake10g071800
Deletion Chr3 12803936 12803948 12
Deletion Chr9 14543226 14543227 1
Deletion Chr10 21394199 21394205 6 OsKitaake10g169000
Deletion Chr3 24902585 24902599 14
Deletion Chr5 26721265 26721275 10
Deletion Chr11 27294001 27317000 22999 OsKitaake11g223401
Deletion Chr5 28973501 28973509 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29421968 29421971 2
Insertion Chr3 6176305 6176307 1
Insertion Chr11 284914 284918 3

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 13441266 Chr3 13936533 OsKitaake03g183500
Translocation Chr11 13442431 Chr3 13936536 OsKitaake03g183500
Translocation Chr7 19950505 Chr1 29491952 OsKitaake01g289000
Translocation Chr7 19950531 Chr1 29492983 OsKitaake01g289000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11883936	C-T	Hetero	INTERGENIC
SBS	Chr1	33938513	T-C	Hetero	INTERGENIC
SBS	Chr1	41141947	C-A	Hetero	INTERGENIC
SBS	Chr2	5790570	C-A	Hetero	INTERGENIC
SBS	Chr2	16472082	A-G	Hetero	INTERGENIC
SBS	Chr2	17233036	C-A	Hetero	INTRON
SBS	Chr2	19372547	G-A	Hetero	INTERGENIC
SBS	Chr2	30858337	T-C	Hetero	INTRON
SBS	Chr3	12512001	T-A	Hetero	INTERGENIC
SBS	Chr3	13417080	T-C	Hetero	INTERGENIC
SBS	Chr4	1599657	A-G	Hetero	INTERGENIC
SBS	Chr4	15915373	G-A	Hetero	INTERGENIC
SBS	Chr4	27067969	C-T	Hetero	INTERGENIC
SBS	Chr5	2711810	G-A	Hetero	INTERGENIC
SBS	Chr5	9409483	A-T	Hetero	INTRON
SBS	Chr5	9861076	T-A	Hetero	INTRON
SBS	Chr5	9861077	T-A	Hetero	INTRON
SBS	Chr5	9861519	A-T	Hetero	INTRON
SBS	Chr6	9487856	G-A	Hetero	INTERGENIC
SBS	Chr6	16497599	A-G	Hetero	INTERGENIC
SBS	Chr6	23213613	C-T	Homo	INTERGENIC
SBS	Chr6	26580835	T-C	Homo	INTERGENIC
SBS	Chr7	4777643	A-G	Hetero	INTERGENIC
SBS	Chr7	6068899	G-A	Hetero	INTERGENIC
SBS	Chr7	15132424	G-A	Hetero	INTERGENIC
SBS	Chr7	28324696	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	6418100	T-C	Hetero	INTERGENIC
SBS	Chr8	13246838	G-C	Homo	INTERGENIC
SBS	Chr8	15471125	G-A	Homo	INTERGENIC
SBS	Chr8	26521968	C-T	Homo	INTERGENIC
SBS	Chr9	20621419	G-A	Hetero	INTERGENIC
SBS	Chr10	1479565	A-T	Hetero	INTERGENIC
SBS	Chr10	5909895	C-T	Hetero	INTRON
SBS	Chr10	20927931	C-A	Hetero	INTERGENIC
SBS	Chr10	22908481	A-T	Hetero	INTERGENIC
SBS	Chr11	6362870	A-T	Hetero	INTERGENIC
SBS	Chr11	27460454	G-A	Homo	INTERGENIC
SBS	Chr12	19646694	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g147683

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	68781	68782	1
Deletion	Chr10	723424	723434	10
Deletion	Chr12	1528866	1528869	3
Deletion	Chr5	2300909	2300911	2
Deletion	Chr3	2336166	2336169	3	OsKitaake03g033300
Deletion	Chr6	2445570	2445575	5
Deletion	Chr6	3779185	3779186	1
Deletion	Chr3	9584535	9584536	1
Deletion	Chr5	10245100	10245103	3
Deletion	Chr10	12074791	12074792	1	OsKitaake10g071800
Deletion	Chr3	12803936	12803948	12
Deletion	Chr9	14543226	14543227	1
Deletion	Chr10	21394199	21394205	6	OsKitaake10g169000
Deletion	Chr3	24902585	24902599	14
Deletion	Chr5	26721265	26721275	10
Deletion	Chr11	27294001	27317000	22999	OsKitaake11g223401
Deletion	Chr5	28973501	28973509	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13441266	Chr3	13936533	OsKitaake03g183500
Translocation	Chr11	13442431	Chr3	13936536	OsKitaake03g183500
Translocation	Chr7	19950505	Chr1	29491952	OsKitaake01g289000
Translocation	Chr7	19950531	Chr1	29492983	OsKitaake01g289000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes