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Mutant Information

Mutant Name	FN1726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1726-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (40% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33303558 T-G Hetero INTRON
SBS Chr2 22055418 C-T Hetero INTERGENIC
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr3 8799064 C-T Hetero INTERGENIC
SBS Chr3 23780868 C-T Homo INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 29343600 C-T Hetero INTERGENIC
SBS Chr4 10323772 C-T Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 33933223 C-G Hetero UTR_3_PRIME
SBS Chr5 7894962 G-A Hetero INTERGENIC
SBS Chr6 8653840 C-A Hetero INTERGENIC
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr8 17227823 G-A Homo INTERGENIC
SBS Chr8 18636691 A-G Homo INTERGENIC
SBS Chr8 19275165 A-T Homo INTERGENIC
SBS Chr9 14289629 G-C Hetero START_GAINED
SBS Chr11 8692823 A-C Hetero INTERGENIC
SBS Chr11 23425354 T-G Hetero INTERGENIC
SBS Chr11 26685043 T-A Hetero INTERGENIC
SBS Chr12 3067137 C-T Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8464411 8464484 73
Deletion Chr8 8934504 8934505 1
Deletion Chr10 13454508 13454510 2
Deletion Chr5 18755197 18755222 25
Deletion Chr4 20667210 20667212 2
Deletion Chr12 22463843 22463857 14
Deletion Chr11 23572844 23572846 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4528057 4528060 2
Insertion Chr1 27305047 27305050 2
Insertion Chr1 40349678 40349681 2
Insertion Chr2 4356449 4356452 2
Insertion Chr12 24386963 24386966 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14408228 Chr1 32612165

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33303558	T-G	Hetero	INTRON
SBS	Chr2	22055418	C-T	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr3	8799064	C-T	Hetero	INTERGENIC
SBS	Chr3	23780868	C-T	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	29343600	C-T	Hetero	INTERGENIC
SBS	Chr4	10323772	C-T	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	33933223	C-G	Hetero	UTR_3_PRIME
SBS	Chr5	7894962	G-A	Hetero	INTERGENIC
SBS	Chr6	8653840	C-A	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr8	17227823	G-A	Homo	INTERGENIC
SBS	Chr8	18636691	A-G	Homo	INTERGENIC
SBS	Chr8	19275165	A-T	Homo	INTERGENIC
SBS	Chr9	14289629	G-C	Hetero	START_GAINED
SBS	Chr11	8692823	A-C	Hetero	INTERGENIC
SBS	Chr11	23425354	T-G	Hetero	INTERGENIC
SBS	Chr11	26685043	T-A	Hetero	INTERGENIC
SBS	Chr12	3067137	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8464411	8464484	73
Deletion	Chr8	8934504	8934505	1
Deletion	Chr10	13454508	13454510	2
Deletion	Chr5	18755197	18755222	25
Deletion	Chr4	20667210	20667212	2
Deletion	Chr12	22463843	22463857	14
Deletion	Chr11	23572844	23572846	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	14408228	Chr1	32612165

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes