Search Kitaake

Mutant Information

Mutant Name	FN1727-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1727-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Short (Between 25% and 74%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1155866 C-T Hetero INTERGENIC
SBS Chr1 12731112 T-C Hetero INTERGENIC
SBS Chr1 41302089 A-G Hetero INTERGENIC
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 12256652 G-A Hetero INTERGENIC
SBS Chr3 20405157 A-C Hetero INTERGENIC
SBS Chr4 2463331 C-T Hetero INTERGENIC
SBS Chr4 7450475 C-T Homo INTERGENIC
SBS Chr4 7619806 G-C Homo INTERGENIC
SBS Chr4 7813300 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g039700
SBS Chr4 32699911 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g263100
SBS Chr5 6870769 A-T Homo INTRON
SBS Chr6 736756 A-G Hetero INTERGENIC
SBS Chr6 29399953 C-T Hetero INTRON
SBS Chr8 1532990 C-T Hetero INTERGENIC
SBS Chr8 8666292 C-T Homo INTRON
SBS Chr8 12271952 A-T Homo INTERGENIC
SBS Chr9 20153240 C-A Homo INTRON
SBS Chr10 7553501 C-T Homo INTERGENIC
SBS Chr10 9831493 C-A Homo INTERGENIC
SBS Chr10 16455643 G-T Homo INTERGENIC
SBS Chr11 19043369 G-A Homo INTERGENIC
SBS Chr11 21649282 T-A Homo UTR_5_PRIME
SBS Chr11 25454294 G-A Homo INTERGENIC
SBS Chr11 27301043 G-A Hetero INTERGENIC
SBS Chr12 9367190 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2574624 2574626 2
Deletion Chr9 3795064 3795066 2
Deletion Chr3 4585202 4585203 1
Deletion Chr10 7991256 7991260 4
Deletion Chr3 8073708 8073717 9
Deletion Chr4 8574814 8574817 3
Deletion Chr1 10116955 10116956 1
Deletion Chr10 10418199 10418213 14
Deletion Chr2 12304001 12481000 176999 10
Deletion Chr7 28978339 28978340 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 10473928 10473931 2
Insertion Chr11 27004305 27004308 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 17721670 18379234 OsKitaake01g184500
Inversion Chr1 17721677 18379235 OsKitaake01g184500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1155866	C-T	Hetero	INTERGENIC
SBS	Chr1	12731112	T-C	Hetero	INTERGENIC
SBS	Chr1	41302089	A-G	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	12256652	G-A	Hetero	INTERGENIC
SBS	Chr3	20405157	A-C	Hetero	INTERGENIC
SBS	Chr4	2463331	C-T	Hetero	INTERGENIC
SBS	Chr4	7450475	C-T	Homo	INTERGENIC
SBS	Chr4	7619806	G-C	Homo	INTERGENIC
SBS	Chr4	7813300	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g039700
SBS	Chr4	32699911	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g263100
SBS	Chr5	6870769	A-T	Homo	INTRON
SBS	Chr6	736756	A-G	Hetero	INTERGENIC
SBS	Chr6	29399953	C-T	Hetero	INTRON
SBS	Chr8	1532990	C-T	Hetero	INTERGENIC
SBS	Chr8	8666292	C-T	Homo	INTRON
SBS	Chr8	12271952	A-T	Homo	INTERGENIC
SBS	Chr9	20153240	C-A	Homo	INTRON
SBS	Chr10	7553501	C-T	Homo	INTERGENIC
SBS	Chr10	9831493	C-A	Homo	INTERGENIC
SBS	Chr10	16455643	G-T	Homo	INTERGENIC
SBS	Chr11	19043369	G-A	Homo	INTERGENIC
SBS	Chr11	21649282	T-A	Homo	UTR_5_PRIME
SBS	Chr11	25454294	G-A	Homo	INTERGENIC
SBS	Chr11	27301043	G-A	Hetero	INTERGENIC
SBS	Chr12	9367190	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2574624	2574626	2
Deletion	Chr9	3795064	3795066	2
Deletion	Chr3	4585202	4585203	1
Deletion	Chr10	7991256	7991260	4
Deletion	Chr3	8073708	8073717	9
Deletion	Chr4	8574814	8574817	3
Deletion	Chr1	10116955	10116956	1
Deletion	Chr10	10418199	10418213	14
Deletion	Chr2	12304001	12481000	176999	10
Deletion	Chr7	28978339	28978340	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17721670	18379234	OsKitaake01g184500
Inversion	Chr1	17721677	18379235	OsKitaake01g184500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes