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Mutant Information

Mutant Name	FN1728-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1728-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28910079 T-A Hetero INTERGENIC
SBS Chr1 28910117 G-A Hetero INTERGENIC
SBS Chr1 29449205 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g288100
SBS Chr1 37261799 G-A Hetero INTERGENIC
SBS Chr2 6765024 T-A Hetero INTRON
SBS Chr2 10965585 T-G Homo NON_SYNONYMOUS_CODING OsKitaake02g128300
SBS Chr3 1928613 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 9868188 G-A Hetero INTERGENIC
SBS Chr3 21907549 C-T Hetero INTERGENIC
SBS Chr3 26472713 C-T Homo INTERGENIC
SBS Chr5 26926470 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g241200
SBS Chr6 6766885 C-T Hetero INTERGENIC
SBS Chr6 14569240 G-A Hetero INTRON
SBS Chr6 14569241 T-A Hetero INTRON
SBS Chr7 2094032 C-G Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr9 6297992 G-A Homo INTERGENIC
SBS Chr10 710873 C-T Hetero INTERGENIC
SBS Chr10 3819168 A-C Hetero INTERGENIC
SBS Chr10 8950922 T-C Homo INTERGENIC
SBS Chr11 16927076 G-T Hetero INTERGENIC
SBS Chr11 16927077 C-T Hetero INTERGENIC
SBS Chr12 11240269 G-A Hetero INTERGENIC
SBS Chr12 13990261 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 501311 501312 1
Deletion Chr9 6297874 6297887 13
Deletion Chr1 7697655 7697658 3
Deletion Chr1 8741706 8741724 18
Deletion Chr5 8981001 9073000 91999 10
Deletion Chr9 10264702 10264704 2
Deletion Chr2 19040393 19040405 12
Deletion Chr1 21318561 21318569 8
Deletion Chr3 21495425 21495427 2
Deletion Chr12 23924004 23924005 1
Deletion Chr2 26174765 26174769 4
Deletion Chr3 30644044 30644045 1
Deletion Chr3 30650840 30650856 16

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17222099 17222101 1
Insertion Chr5 30258973 30258975 1
Insertion Chr7 12020386 12020388 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 27489313 27634314
Inversion Chr8 27489323 27675083
Inversion Chr5 29151573 29873699
Inversion Chr5 29151579 29873742

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 27634316 Chr1 1001417
Translocation Chr8 27675063 Chr1 1001402

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28910079	T-A	Hetero	INTERGENIC
SBS	Chr1	28910117	G-A	Hetero	INTERGENIC
SBS	Chr1	29449205	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g288100
SBS	Chr1	37261799	G-A	Hetero	INTERGENIC
SBS	Chr2	6765024	T-A	Hetero	INTRON
SBS	Chr2	10965585	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g128300
SBS	Chr3	1928613	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	9868188	G-A	Hetero	INTERGENIC
SBS	Chr3	21907549	C-T	Hetero	INTERGENIC
SBS	Chr3	26472713	C-T	Homo	INTERGENIC
SBS	Chr5	26926470	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g241200
SBS	Chr6	6766885	C-T	Hetero	INTERGENIC
SBS	Chr6	14569240	G-A	Hetero	INTRON
SBS	Chr6	14569241	T-A	Hetero	INTRON
SBS	Chr7	2094032	C-G	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr9	6297992	G-A	Homo	INTERGENIC
SBS	Chr10	710873	C-T	Hetero	INTERGENIC
SBS	Chr10	3819168	A-C	Hetero	INTERGENIC
SBS	Chr10	8950922	T-C	Homo	INTERGENIC
SBS	Chr11	16927076	G-T	Hetero	INTERGENIC
SBS	Chr11	16927077	C-T	Hetero	INTERGENIC
SBS	Chr12	11240269	G-A	Hetero	INTERGENIC
SBS	Chr12	13990261	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	501311	501312	1
Deletion	Chr9	6297874	6297887	13
Deletion	Chr1	7697655	7697658	3
Deletion	Chr1	8741706	8741724	18
Deletion	Chr5	8981001	9073000	91999	10
Deletion	Chr9	10264702	10264704	2
Deletion	Chr2	19040393	19040405	12
Deletion	Chr1	21318561	21318569	8
Deletion	Chr3	21495425	21495427	2
Deletion	Chr12	23924004	23924005	1
Deletion	Chr2	26174765	26174769	4
Deletion	Chr3	30644044	30644045	1
Deletion	Chr3	30650840	30650856	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	27489313	27634314
Inversion	Chr8	27489323	27675083
Inversion	Chr5	29151573	29873699
Inversion	Chr5	29151579	29873742

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes