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Mutant Information

Mutant Name	FN1730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1730-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3473453 C-T Hetero INTERGENIC
SBS Chr1 26996198 T-C Hetero INTERGENIC
SBS Chr2 15615168 C-T Hetero INTERGENIC
SBS Chr3 26988812 T-C Hetero INTERGENIC
SBS Chr4 6349187 T-A Homo INTERGENIC
SBS Chr4 8305894 T-G Hetero INTERGENIC
SBS Chr4 13027100 T-G Hetero INTERGENIC
SBS Chr4 35764334 T-G Hetero INTERGENIC
SBS Chr5 10338279 C-T Hetero INTERGENIC
SBS Chr5 19990951 C-T Hetero INTERGENIC
SBS Chr5 25215214 G-A Hetero INTERGENIC
SBS Chr5 29795771 A-G Hetero INTERGENIC
SBS Chr6 9390962 T-C Homo INTERGENIC
SBS Chr6 10738622 A-T Hetero INTERGENIC
SBS Chr6 10738626 C-T Hetero INTERGENIC
SBS Chr7 12385898 T-C Hetero INTERGENIC
SBS Chr7 17204324 T-A Hetero INTERGENIC
SBS Chr8 8861210 C-T Hetero INTERGENIC
SBS Chr8 24912161 G-C Homo INTERGENIC
SBS Chr11 1354501 G-T Hetero INTERGENIC
SBS Chr11 12127919 T-C Hetero INTRON
SBS Chr12 2087671 C-T Hetero INTERGENIC
SBS Chr12 19470967 A-G Hetero SYNONYMOUS_CODING

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 973001 1070000 96999 5
Deletion Chr9 1077001 1119000 41999 OsKitaake09g006700
Deletion Chr12 15175702 15175709 7
Deletion Chr12 15349001 15360000 10999
Deletion Chr12 24027001 24599000 571999 62
Deletion Chr1 25238001 25367000 128999 21
Deletion Chr1 26182001 26229000 46999 6
Deletion Chr1 26232001 26431000 198999 19
Deletion Chr1 27960414 27960514 100
Deletion Chr8 28707001 28727000 19999 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31380454 31380457 2
Insertion Chr5 6731649 6731652 2
Insertion Chr6 16647037 16647040 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 25237822 26180836 OsKitaake01g255201
Inversion Chr1 26428665 26503477

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5873160 Chr3 22745964
Translocation Chr7 5873174 Chr3 22626626
Translocation Chr12 16413101 Chr4 33232051
Translocation Chr12 16872689 Chr4 33188514

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3473453	C-T	Hetero	INTERGENIC
SBS	Chr1	26996198	T-C	Hetero	INTERGENIC
SBS	Chr2	15615168	C-T	Hetero	INTERGENIC
SBS	Chr3	26988812	T-C	Hetero	INTERGENIC
SBS	Chr4	6349187	T-A	Homo	INTERGENIC
SBS	Chr4	8305894	T-G	Hetero	INTERGENIC
SBS	Chr4	13027100	T-G	Hetero	INTERGENIC
SBS	Chr4	35764334	T-G	Hetero	INTERGENIC
SBS	Chr5	10338279	C-T	Hetero	INTERGENIC
SBS	Chr5	19990951	C-T	Hetero	INTERGENIC
SBS	Chr5	25215214	G-A	Hetero	INTERGENIC
SBS	Chr5	29795771	A-G	Hetero	INTERGENIC
SBS	Chr6	9390962	T-C	Homo	INTERGENIC
SBS	Chr6	10738622	A-T	Hetero	INTERGENIC
SBS	Chr6	10738626	C-T	Hetero	INTERGENIC
SBS	Chr7	12385898	T-C	Hetero	INTERGENIC
SBS	Chr7	17204324	T-A	Hetero	INTERGENIC
SBS	Chr8	8861210	C-T	Hetero	INTERGENIC
SBS	Chr8	24912161	G-C	Homo	INTERGENIC
SBS	Chr11	1354501	G-T	Hetero	INTERGENIC
SBS	Chr11	12127919	T-C	Hetero	INTRON
SBS	Chr12	2087671	C-T	Hetero	INTERGENIC
SBS	Chr12	19470967	A-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	973001	1070000	96999	5
Deletion	Chr9	1077001	1119000	41999	OsKitaake09g006700
Deletion	Chr12	15175702	15175709	7
Deletion	Chr12	15349001	15360000	10999
Deletion	Chr12	24027001	24599000	571999	62
Deletion	Chr1	25238001	25367000	128999	21
Deletion	Chr1	26182001	26229000	46999	6
Deletion	Chr1	26232001	26431000	198999	19
Deletion	Chr1	27960414	27960514	100
Deletion	Chr8	28707001	28727000	19999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25237822	26180836	OsKitaake01g255201
Inversion	Chr1	26428665	26503477

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes