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Mutant Information

Mutant Name	FN1731-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1731-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5012654 G-A Hetero INTERGENIC
SBS Chr1 12264144 T-C Homo INTRON
SBS Chr1 29058290 T-A Hetero INTERGENIC
SBS Chr1 41301137 A-G Hetero INTERGENIC
SBS Chr1 43308051 G-A Hetero INTERGENIC
SBS Chr2 11429196 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g132200
SBS Chr2 31772868 C-T Hetero INTERGENIC
SBS Chr3 13333186 G-A Homo INTERGENIC
SBS Chr3 21385012 T-C Homo INTERGENIC
SBS Chr3 25158659 C-A Homo INTERGENIC
SBS Chr4 4916925 A-C Hetero INTERGENIC
SBS Chr4 5450776 G-A Hetero NON_SYNONYMOUS_CODING
SBS Chr4 10851642 A-G Hetero INTERGENIC
SBS Chr4 11851099 G-A Hetero INTERGENIC
SBS Chr4 12316679 C-T Hetero INTERGENIC
SBS Chr5 12125195 G-T Hetero INTERGENIC
SBS Chr5 22910018 T-C Hetero INTERGENIC
SBS Chr6 11184871 T-C Hetero INTERGENIC
SBS Chr6 18188058 A-C Hetero INTRON
SBS Chr6 18733856 T-A Hetero INTERGENIC
SBS Chr7 12142319 G-A Hetero INTERGENIC
SBS Chr7 14828403 G-A Hetero INTERGENIC
SBS Chr7 16583704 G-T Hetero INTERGENIC
SBS Chr7 27736148 C-T Homo INTERGENIC
SBS Chr8 9985949 G-C Hetero INTERGENIC
SBS Chr8 13811788 G-T Hetero INTERGENIC
SBS Chr8 19262922 C-A Hetero INTERGENIC
SBS Chr8 19262923 G-A Hetero INTERGENIC
SBS Chr8 19785889 C-A Hetero INTERGENIC
SBS Chr8 24983551 C-G Homo INTERGENIC
SBS Chr8 27977937 C-T Hetero INTERGENIC
SBS Chr9 16464527 A-G Homo INTERGENIC
SBS Chr10 20191445 C-T Homo INTERGENIC
SBS Chr11 5321831 T-A Hetero INTERGENIC
SBS Chr11 11590335 G-C Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2361966 2361968 2
Deletion Chr9 3135778 3135780 2
Deletion Chr10 4599028 4599030 2
Deletion Chr8 6941807 6941809 2
Deletion Chr1 7852262 7852263 1
Deletion Chr10 8654782 8654829 47 OsKitaake10g053166
Deletion Chr10 10203767 10203877 110
Deletion Chr4 12299697 12299703 6
Deletion Chr2 17105626 17105736 110
Deletion Chr10 19573776 19573788 12
Deletion Chr8 23421230 23421232 2
Deletion Chr4 34281905 34281919 14

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43987690 43987694 3
Insertion Chr8 1553296 1553299 2
Insertion Chr8 9052760 9052763 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 3395973 4309078
Inversion Chr4 3395990 4309098

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5012654	G-A	Hetero	INTERGENIC
SBS	Chr1	12264144	T-C	Homo	INTRON
SBS	Chr1	29058290	T-A	Hetero	INTERGENIC
SBS	Chr1	41301137	A-G	Hetero	INTERGENIC
SBS	Chr1	43308051	G-A	Hetero	INTERGENIC
SBS	Chr2	11429196	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g132200
SBS	Chr2	31772868	C-T	Hetero	INTERGENIC
SBS	Chr3	13333186	G-A	Homo	INTERGENIC
SBS	Chr3	21385012	T-C	Homo	INTERGENIC
SBS	Chr3	25158659	C-A	Homo	INTERGENIC
SBS	Chr4	4916925	A-C	Hetero	INTERGENIC
SBS	Chr4	5450776	G-A	Hetero	NON_SYNONYMOUS_CODING
SBS	Chr4	10851642	A-G	Hetero	INTERGENIC
SBS	Chr4	11851099	G-A	Hetero	INTERGENIC
SBS	Chr4	12316679	C-T	Hetero	INTERGENIC
SBS	Chr5	12125195	G-T	Hetero	INTERGENIC
SBS	Chr5	22910018	T-C	Hetero	INTERGENIC
SBS	Chr6	11184871	T-C	Hetero	INTERGENIC
SBS	Chr6	18188058	A-C	Hetero	INTRON
SBS	Chr6	18733856	T-A	Hetero	INTERGENIC
SBS	Chr7	12142319	G-A	Hetero	INTERGENIC
SBS	Chr7	14828403	G-A	Hetero	INTERGENIC
SBS	Chr7	16583704	G-T	Hetero	INTERGENIC
SBS	Chr7	27736148	C-T	Homo	INTERGENIC
SBS	Chr8	9985949	G-C	Hetero	INTERGENIC
SBS	Chr8	13811788	G-T	Hetero	INTERGENIC
SBS	Chr8	19262922	C-A	Hetero	INTERGENIC
SBS	Chr8	19262923	G-A	Hetero	INTERGENIC
SBS	Chr8	19785889	C-A	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr8	27977937	C-T	Hetero	INTERGENIC
SBS	Chr9	16464527	A-G	Homo	INTERGENIC
SBS	Chr10	20191445	C-T	Homo	INTERGENIC
SBS	Chr11	5321831	T-A	Hetero	INTERGENIC
SBS	Chr11	11590335	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2361966	2361968	2
Deletion	Chr9	3135778	3135780	2
Deletion	Chr10	4599028	4599030	2
Deletion	Chr8	6941807	6941809	2
Deletion	Chr1	7852262	7852263	1
Deletion	Chr10	8654782	8654829	47	OsKitaake10g053166
Deletion	Chr10	10203767	10203877	110
Deletion	Chr4	12299697	12299703	6
Deletion	Chr2	17105626	17105736	110
Deletion	Chr10	19573776	19573788	12
Deletion	Chr8	23421230	23421232	2
Deletion	Chr4	34281905	34281919	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3395973	4309078
Inversion	Chr4	3395990	4309098

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes