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Mutant Information

Mutant Name	FN1732-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1732-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19967155 G-A Hetero INTERGENIC
SBS Chr1 38548222 T-A Hetero UTR_5_PRIME
SBS Chr1 39163234 G-T Hetero INTERGENIC
SBS Chr1 39163235 A-T Hetero INTERGENIC
SBS Chr1 43046301 C-T Hetero INTERGENIC
SBS Chr2 18116004 C-T Homo INTERGENIC
SBS Chr2 19545256 G-A Hetero INTERGENIC
SBS Chr2 29184812 C-G Hetero INTERGENIC
SBS Chr3 10634991 G-A Hetero INTERGENIC
SBS Chr3 18471159 C-A Homo INTERGENIC
SBS Chr3 25648400 G-A Homo INTERGENIC
SBS Chr4 15516089 G-C Homo INTERGENIC
SBS Chr4 23332623 T-C Homo INTERGENIC
SBS Chr4 28742684 T-A Hetero INTRON
SBS Chr5 18383397 G-T Hetero INTERGENIC
SBS Chr5 24568958 G-T Hetero INTERGENIC
SBS Chr6 2740904 T-C Hetero UTR_5_PRIME
SBS Chr6 5573902 G-T Hetero INTERGENIC
SBS Chr6 6696769 T-A Hetero INTERGENIC
SBS Chr6 9099665 A-G Hetero UTR_3_PRIME
SBS Chr6 12642251 C-G Hetero INTERGENIC
SBS Chr7 19308389 G-A Hetero INTERGENIC
SBS Chr7 26682972 T-G Hetero INTERGENIC
SBS Chr8 10065968 A-C Hetero INTERGENIC
SBS Chr8 22273459 T-C Hetero INTERGENIC
SBS Chr8 25056943 G-A Hetero INTERGENIC
SBS Chr9 10737796 C-T Homo INTERGENIC
SBS Chr9 18930313 C-G Homo INTERGENIC
SBS Chr10 9130234 C-A Hetero INTERGENIC
SBS Chr10 10060060 T-C Hetero INTERGENIC
SBS Chr11 14343878 G-A Hetero INTERGENIC
SBS Chr11 27715387 C-T Hetero INTRON
SBS Chr12 9488001 T-G Homo INTRON
SBS Chr12 15617651 T-G Homo INTERGENIC
SBS Chr12 26045725 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 5287814 5287820 6
Deletion Chr8 5397286 5397289 3
Deletion Chr8 5397562 5397564 2
Deletion Chr10 5592699 5592702 3
Deletion Chr5 7343247 7343258 11
Deletion Chr9 7488102 7488110 8
Deletion Chr3 8509552 8509554 2 OsKitaake03g116700
Deletion Chr2 8708992 8708993 1
Deletion Chr11 11030556 11030559 3
Deletion Chr7 12340679 12340680 1
Deletion Chr8 12547053 12547067 14
Deletion Chr7 13343001 13354000 10999
Deletion Chr12 16834707 16834708 1
Deletion Chr6 18480753 18480757 4
Deletion Chr3 25341579 25341588 9
Deletion Chr1 37887445 37887446 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3842643 3842646 2
Insertion Chr12 3539878 3539881 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 12985895 Chr2 11463916
Translocation Chr7 12986019 Chr2 11463751
Translocation Chr4 35191697 Chr2 8655259

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19967155	G-A	Hetero	INTERGENIC
SBS	Chr1	38548222	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	39163234	G-T	Hetero	INTERGENIC
SBS	Chr1	39163235	A-T	Hetero	INTERGENIC
SBS	Chr1	43046301	C-T	Hetero	INTERGENIC
SBS	Chr2	18116004	C-T	Homo	INTERGENIC
SBS	Chr2	19545256	G-A	Hetero	INTERGENIC
SBS	Chr2	29184812	C-G	Hetero	INTERGENIC
SBS	Chr3	10634991	G-A	Hetero	INTERGENIC
SBS	Chr3	18471159	C-A	Homo	INTERGENIC
SBS	Chr3	25648400	G-A	Homo	INTERGENIC
SBS	Chr4	15516089	G-C	Homo	INTERGENIC
SBS	Chr4	23332623	T-C	Homo	INTERGENIC
SBS	Chr4	28742684	T-A	Hetero	INTRON
SBS	Chr5	18383397	G-T	Hetero	INTERGENIC
SBS	Chr5	24568958	G-T	Hetero	INTERGENIC
SBS	Chr6	2740904	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	5573902	G-T	Hetero	INTERGENIC
SBS	Chr6	6696769	T-A	Hetero	INTERGENIC
SBS	Chr6	9099665	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	12642251	C-G	Hetero	INTERGENIC
SBS	Chr7	19308389	G-A	Hetero	INTERGENIC
SBS	Chr7	26682972	T-G	Hetero	INTERGENIC
SBS	Chr8	10065968	A-C	Hetero	INTERGENIC
SBS	Chr8	22273459	T-C	Hetero	INTERGENIC
SBS	Chr8	25056943	G-A	Hetero	INTERGENIC
SBS	Chr9	10737796	C-T	Homo	INTERGENIC
SBS	Chr9	18930313	C-G	Homo	INTERGENIC
SBS	Chr10	9130234	C-A	Hetero	INTERGENIC
SBS	Chr10	10060060	T-C	Hetero	INTERGENIC
SBS	Chr11	14343878	G-A	Hetero	INTERGENIC
SBS	Chr11	27715387	C-T	Hetero	INTRON
SBS	Chr12	9488001	T-G	Homo	INTRON
SBS	Chr12	15617651	T-G	Homo	INTERGENIC
SBS	Chr12	26045725	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	5287814	5287820	6
Deletion	Chr8	5397286	5397289	3
Deletion	Chr8	5397562	5397564	2
Deletion	Chr10	5592699	5592702	3
Deletion	Chr5	7343247	7343258	11
Deletion	Chr9	7488102	7488110	8
Deletion	Chr3	8509552	8509554	2	OsKitaake03g116700
Deletion	Chr2	8708992	8708993	1
Deletion	Chr11	11030556	11030559	3
Deletion	Chr7	12340679	12340680	1
Deletion	Chr8	12547053	12547067	14
Deletion	Chr7	13343001	13354000	10999
Deletion	Chr12	16834707	16834708	1
Deletion	Chr6	18480753	18480757	4
Deletion	Chr3	25341579	25341588	9
Deletion	Chr1	37887445	37887446	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	12985895	Chr2	11463916
Translocation	Chr7	12986019	Chr2	11463751
Translocation	Chr4	35191697	Chr2	8655259

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes