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Mutant Information

Mutant Name	FN1734-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1734-S Alignment File
Seed Availability	No
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37029455	G-A	Hetero	INTERGENIC
SBS	Chr1	40886259	C-G	Hetero	INTRON
SBS	Chr2	1720197	T-A	Hetero	INTERGENIC
SBS	Chr2	28008641	C-A	Hetero	INTERGENIC
SBS	Chr3	20833188	G-A	Hetero	INTRON
SBS	Chr4	9465966	G-C	Hetero	INTERGENIC
SBS	Chr4	13726312	G-C	Hetero	INTERGENIC
SBS	Chr4	23227797	G-T	Hetero	INTERGENIC
SBS	Chr5	11783029	C-G	Homo	UTR_3_PRIME
SBS	Chr5	20265943	G-A	Hetero	INTERGENIC
SBS	Chr6	3145226	G-T	Hetero	INTERGENIC
SBS	Chr6	14819964	T-C	Hetero	INTERGENIC
SBS	Chr6	17954938	A-T	Hetero	INTRON
SBS	Chr6	18595576	T-A	Hetero	INTERGENIC
SBS	Chr6	30483070	T-C	Hetero	INTERGENIC
SBS	Chr7	5242043	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g064000
SBS	Chr7	5784182	T-A	Homo	INTERGENIC
SBS	Chr7	26718303	G-A	Homo	INTERGENIC
SBS	Chr8	2560204	C-A	Homo	INTRON
SBS	Chr9	1294510	C-G	Homo	INTERGENIC
SBS	Chr9	17496105	G-A	Homo	INTRON
SBS	Chr10	22781807	C-G	Hetero	INTRON
SBS	Chr10	23733870	G-T	Hetero	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1303001	1352000	48999
Deletion	Chr5	1362001	1383000	20999	OsKitaake05g017100
Deletion	Chr8	4079736	4079737	1
Deletion	Chr8	4320628	4320630	2
Deletion	Chr1	9644001	9660000	15999	OsKitaake01g123400
Deletion	Chr12	10109366	10109367	1
Deletion	Chr11	12522101	12522266	165
Deletion	Chr11	12524668	12524833	165
Deletion	Chr4	12803763	12803764	1
Deletion	Chr6	15758778	15758779	1
Deletion	Chr8	21298001	21309000	10999	OsKitaake08g159900
Deletion	Chr2	24409001	24433000	23999
Deletion	Chr3	27998001	28009000	10999
Deletion	Chr3	28577001	28599000	21999	OsKitaake03g296500
Deletion	Chr2	28652330	28652335	5
Deletion	Chr6	29359841	29359842	1	OsKitaake06g271900
Deletion	Chr1	38702001	38713000	10999	OsKitaake01g413900

Insertions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	12687326	12687329	2
Insertion	Chr4	22525662	22525665	2
Insertion	Chr11	29598358	29598362	3
Insertion	Chr12	3460532	3460535	2
Insertion	Chr12	9071882	9071885	2
Insertion	Chr5	30215229	30215231	1
Insertion	Chr6	15745022	15745025	2
Insertion	Chr8	13240636	13240647	10
Insertion	Chr11	3383179	3383181	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6458049	6812340
Inversion	Chr5	6458061	6812352