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Mutant Information

Mutant Name	FN1735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1735-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7265762 C-T Hetero INTERGENIC
SBS Chr1 28476936 G-T Hetero INTERGENIC
SBS Chr1 32868130 A-G Hetero INTERGENIC
SBS Chr1 38090227 T-A Homo INTRON
SBS Chr2 24647474 G-A Hetero INTERGENIC
SBS Chr2 36766271 T-C Hetero INTERGENIC
SBS Chr3 7210810 G-A Homo INTERGENIC
SBS Chr3 13235993 T-C Hetero INTRON
SBS Chr3 13236730 G-C Hetero INTRON
SBS Chr3 15729038 C-T Hetero INTERGENIC
SBS Chr3 20124248 T-C Hetero INTERGENIC
SBS Chr3 20317828 G-T Hetero INTERGENIC
SBS Chr3 30853277 C-T Homo UTR_3_PRIME
SBS Chr4 4346819 C-A Hetero INTRON
SBS Chr4 4911865 C-G Hetero INTERGENIC
SBS Chr4 9104835 C-T Hetero INTERGENIC
SBS Chr4 30611781 C-G Hetero INTERGENIC
SBS Chr4 30658289 T-A Hetero INTERGENIC
SBS Chr6 1142516 G-A Homo INTERGENIC
SBS Chr6 1800573 T-C Hetero INTERGENIC
SBS Chr6 17693992 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g163400
SBS Chr6 17778597 G-A Homo INTERGENIC
SBS Chr6 22560279 T-C Hetero INTERGENIC
SBS Chr6 30444529 G-A Hetero INTERGENIC
SBS Chr7 21057171 C-T Hetero INTERGENIC
SBS Chr8 6776100 T-C Hetero INTERGENIC
SBS Chr9 2547463 T-A Hetero INTRON
SBS Chr10 418881 G-A Homo NON_SYNONYMOUS_CODING OsKitaake10g002800
SBS Chr10 11669629 C-T Homo INTERGENIC
SBS Chr10 17079615 A-G Hetero INTERGENIC
SBS Chr10 17983850 T-C Hetero INTERGENIC
SBS Chr11 5743579 T-A Hetero INTRON
SBS Chr11 7645031 G-A Hetero INTERGENIC
SBS Chr11 8797624 C-T Hetero INTERGENIC
SBS Chr11 21507457 A-T Hetero INTERGENIC
SBS Chr12 4087971 A-G Homo INTERGENIC
SBS Chr12 14896632 C-T Homo INTERGENIC
SBS Chr12 18766028 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2191323 2191324 1
Deletion Chr12 2827001 2987000 159999 15
Deletion Chr12 3365150 3365165 15
Deletion Chr3 3508126 3508128 2
Deletion Chr12 4233993 4233994 1
Deletion Chr2 10275469 10275470 1
Deletion Chr10 14863282 14863284 2
Deletion Chr7 17011517 17011520 3
Deletion Chr7 17486001 17686000 199999 17
Deletion Chr8 19802274 19802285 11
Deletion Chr12 21669496 21669502 6
Deletion Chr4 24323497 24323501 4
Deletion Chr1 41559509 41559517 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36424500 36424503 2
Insertion Chr2 24647276 24647278 1
Insertion Chr3 2131756 2131759 2
Insertion Chr8 21405234 21405237 2
Insertion Chr6 17621 17623 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2760311 2828576
Inversion Chr6 6765263 7187344
Inversion Chr6 6765280 7187355
Inversion Chr1 18861176 19142376
Inversion Chr1 19632827 19709241 OsKitaake01g195600
Inversion Chr7 21421515 22197233

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2760321 Chr11 16252740
Translocation Chr12 2986291 Chr11 16252548
Translocation Chr8 7260935 Chr1 19618130 OsKitaake01g195500
Translocation Chr8 7261013 Chr1 18861144
Translocation Chr11 14585943 Chr7 21071734 OsKitaake07g174400
Translocation Chr11 14586148 Chr7 21596959 OsKitaake07g180400
Translocation Chr7 18502222 Chr1 18989441 2
Translocation Chr7 21584047 Chr4 27495735
Translocation Chr7 21596953 Chr4 27495810 OsKitaake07g180400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7265762	C-T	Hetero	INTERGENIC
SBS	Chr1	28476936	G-T	Hetero	INTERGENIC
SBS	Chr1	32868130	A-G	Hetero	INTERGENIC
SBS	Chr1	38090227	T-A	Homo	INTRON
SBS	Chr2	24647474	G-A	Hetero	INTERGENIC
SBS	Chr2	36766271	T-C	Hetero	INTERGENIC
SBS	Chr3	7210810	G-A	Homo	INTERGENIC
SBS	Chr3	13235993	T-C	Hetero	INTRON
SBS	Chr3	13236730	G-C	Hetero	INTRON
SBS	Chr3	15729038	C-T	Hetero	INTERGENIC
SBS	Chr3	20124248	T-C	Hetero	INTERGENIC
SBS	Chr3	20317828	G-T	Hetero	INTERGENIC
SBS	Chr3	30853277	C-T	Homo	UTR_3_PRIME
SBS	Chr4	4346819	C-A	Hetero	INTRON
SBS	Chr4	4911865	C-G	Hetero	INTERGENIC
SBS	Chr4	9104835	C-T	Hetero	INTERGENIC
SBS	Chr4	30611781	C-G	Hetero	INTERGENIC
SBS	Chr4	30658289	T-A	Hetero	INTERGENIC
SBS	Chr6	1142516	G-A	Homo	INTERGENIC
SBS	Chr6	1800573	T-C	Hetero	INTERGENIC
SBS	Chr6	17693992	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g163400
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	22560279	T-C	Hetero	INTERGENIC
SBS	Chr6	30444529	G-A	Hetero	INTERGENIC
SBS	Chr7	21057171	C-T	Hetero	INTERGENIC
SBS	Chr8	6776100	T-C	Hetero	INTERGENIC
SBS	Chr9	2547463	T-A	Hetero	INTRON
SBS	Chr10	418881	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g002800
SBS	Chr10	11669629	C-T	Homo	INTERGENIC
SBS	Chr10	17079615	A-G	Hetero	INTERGENIC
SBS	Chr10	17983850	T-C	Hetero	INTERGENIC
SBS	Chr11	5743579	T-A	Hetero	INTRON
SBS	Chr11	7645031	G-A	Hetero	INTERGENIC
SBS	Chr11	8797624	C-T	Hetero	INTERGENIC
SBS	Chr11	21507457	A-T	Hetero	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC
SBS	Chr12	14896632	C-T	Homo	INTERGENIC
SBS	Chr12	18766028	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2191323	2191324	1
Deletion	Chr12	2827001	2987000	159999	15
Deletion	Chr12	3365150	3365165	15
Deletion	Chr3	3508126	3508128	2
Deletion	Chr12	4233993	4233994	1
Deletion	Chr2	10275469	10275470	1
Deletion	Chr10	14863282	14863284	2
Deletion	Chr7	17011517	17011520	3
Deletion	Chr7	17486001	17686000	199999	17
Deletion	Chr8	19802274	19802285	11
Deletion	Chr12	21669496	21669502	6
Deletion	Chr4	24323497	24323501	4
Deletion	Chr1	41559509	41559517	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2760311	2828576
Inversion	Chr6	6765263	7187344
Inversion	Chr6	6765280	7187355
Inversion	Chr1	18861176	19142376
Inversion	Chr1	19632827	19709241	OsKitaake01g195600
Inversion	Chr7	21421515	22197233

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes