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Mutant Information

Mutant Name	FN1737-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1737-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5756509 C-T Hetero INTRON
SBS Chr1 24887258 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g240400
SBS Chr1 29055874 C-T Hetero INTERGENIC
SBS Chr1 33925945 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g348800
SBS Chr2 951013 A-G Homo INTRON
SBS Chr2 4288172 A-G Hetero INTERGENIC
SBS Chr2 7654948 C-A Hetero INTERGENIC
SBS Chr2 10483146 T-A Homo INTERGENIC
SBS Chr2 14000382 G-A Homo INTERGENIC
SBS Chr2 28317922 T-C Hetero INTERGENIC
SBS Chr3 2745998 C-G Hetero INTERGENIC
SBS Chr3 7633425 C-T Hetero INTRON
SBS Chr3 29363539 G-A Hetero INTERGENIC
SBS Chr4 8823543 C-T Homo INTERGENIC
SBS Chr4 18644581 A-G Hetero INTERGENIC
SBS Chr4 21203207 C-T Hetero INTERGENIC
SBS Chr5 4262662 A-C Homo INTERGENIC
SBS Chr5 20613041 G-T Hetero INTERGENIC
SBS Chr6 6848851 A-T Hetero INTERGENIC
SBS Chr6 12441439 C-T Hetero START_GAINED
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 28877222 G-A Hetero INTERGENIC
SBS Chr7 11130521 G-A Homo INTERGENIC
SBS Chr7 25264679 G-A Hetero INTRON
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 12012663 C-T Homo UTR_3_PRIME
SBS Chr9 4414984 C-T Hetero INTERGENIC
SBS Chr9 9420775 G-T Hetero STOP_GAINED OsKitaake09g056700
SBS Chr9 13515418 G-A Hetero INTERGENIC
SBS Chr9 15426845 G-A Hetero INTERGENIC
SBS Chr10 12823607 T-C Hetero INTERGENIC
SBS Chr11 3526262 T-A Homo INTERGENIC
SBS Chr11 3526264 T-A Homo INTERGENIC
SBS Chr11 3526267 T-A Homo INTERGENIC
SBS Chr11 15080361 C-T Hetero INTRON
SBS Chr11 15080362 C-T Hetero INTRON
SBS Chr11 22640036 G-T Hetero INTRON
SBS Chr12 1885499 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g029100
SBS Chr12 1885500 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g029100
SBS Chr12 14768786 C-T Hetero INTERGENIC
SBS Chr12 22643496 A-T Homo INTERGENIC
SBS Chr12 24930042 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1163436 1163437 1
Deletion Chr7 2085938 2085939 1
Deletion Chr8 2484081 2484083 2
Deletion Chr6 5424962 5424974 12
Deletion Chr2 7852001 7888000 35999 3
Deletion Chr2 8004030 8004031 1
Deletion Chr4 8445099 8445100 1
Deletion Chr7 10143986 10143987 1
Deletion Chr10 12312069 12312070 1
Deletion Chr4 12323409 12323413 4
Deletion Chr2 16104698 16104709 11
Deletion Chr4 17749280 17749289 9
Deletion Chr3 18126589 18126596 7
Deletion Chr7 19602964 19602966 2
Deletion Chr2 21829325 21829326 1
Deletion Chr6 26374596 26374597 1
Deletion Chr1 32109620 32109621 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 23342413 23342416 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 5754739 5900515 2
Inversion Chr2 5754746 5900523 2
Inversion Chr2 7852608 8151434
Inversion Chr2 7887200 8151450
Inversion Chr6 9134480 9247784 OsKitaake06g109600
Inversion Chr6 9134495 9247793 OsKitaake06g109600
Inversion Chr4 13830405 14817335 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1461321 Chr2 16693601 OsKitaake03g020800
Translocation Chr3 1461357 Chr2 16699942 OsKitaake03g020800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5756509	C-T	Hetero	INTRON
SBS	Chr1	24887258	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g240400
SBS	Chr1	29055874	C-T	Hetero	INTERGENIC
SBS	Chr1	33925945	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g348800
SBS	Chr2	951013	A-G	Homo	INTRON
SBS	Chr2	4288172	A-G	Hetero	INTERGENIC
SBS	Chr2	7654948	C-A	Hetero	INTERGENIC
SBS	Chr2	10483146	T-A	Homo	INTERGENIC
SBS	Chr2	14000382	G-A	Homo	INTERGENIC
SBS	Chr2	28317922	T-C	Hetero	INTERGENIC
SBS	Chr3	2745998	C-G	Hetero	INTERGENIC
SBS	Chr3	7633425	C-T	Hetero	INTRON
SBS	Chr3	29363539	G-A	Hetero	INTERGENIC
SBS	Chr4	8823543	C-T	Homo	INTERGENIC
SBS	Chr4	18644581	A-G	Hetero	INTERGENIC
SBS	Chr4	21203207	C-T	Hetero	INTERGENIC
SBS	Chr5	4262662	A-C	Homo	INTERGENIC
SBS	Chr5	20613041	G-T	Hetero	INTERGENIC
SBS	Chr6	6848851	A-T	Hetero	INTERGENIC
SBS	Chr6	12441439	C-T	Hetero	START_GAINED
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	28877222	G-A	Hetero	INTERGENIC
SBS	Chr7	11130521	G-A	Homo	INTERGENIC
SBS	Chr7	25264679	G-A	Hetero	INTRON
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	12012663	C-T	Homo	UTR_3_PRIME
SBS	Chr9	4414984	C-T	Hetero	INTERGENIC
SBS	Chr9	9420775	G-T	Hetero	STOP_GAINED	OsKitaake09g056700
SBS	Chr9	13515418	G-A	Hetero	INTERGENIC
SBS	Chr9	15426845	G-A	Hetero	INTERGENIC
SBS	Chr10	12823607	T-C	Hetero	INTERGENIC
SBS	Chr11	3526262	T-A	Homo	INTERGENIC
SBS	Chr11	3526264	T-A	Homo	INTERGENIC
SBS	Chr11	3526267	T-A	Homo	INTERGENIC
SBS	Chr11	15080361	C-T	Hetero	INTRON
SBS	Chr11	15080362	C-T	Hetero	INTRON
SBS	Chr11	22640036	G-T	Hetero	INTRON
SBS	Chr12	1885499	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g029100
SBS	Chr12	1885500	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g029100
SBS	Chr12	14768786	C-T	Hetero	INTERGENIC
SBS	Chr12	22643496	A-T	Homo	INTERGENIC
SBS	Chr12	24930042	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1163436	1163437	1
Deletion	Chr7	2085938	2085939	1
Deletion	Chr8	2484081	2484083	2
Deletion	Chr6	5424962	5424974	12
Deletion	Chr2	7852001	7888000	35999	3
Deletion	Chr2	8004030	8004031	1
Deletion	Chr4	8445099	8445100	1
Deletion	Chr7	10143986	10143987	1
Deletion	Chr10	12312069	12312070	1
Deletion	Chr4	12323409	12323413	4
Deletion	Chr2	16104698	16104709	11
Deletion	Chr4	17749280	17749289	9
Deletion	Chr3	18126589	18126596	7
Deletion	Chr7	19602964	19602966	2
Deletion	Chr2	21829325	21829326	1
Deletion	Chr6	26374596	26374597	1
Deletion	Chr1	32109620	32109621	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5754739	5900515	2
Inversion	Chr2	5754746	5900523	2
Inversion	Chr2	7852608	8151434
Inversion	Chr2	7887200	8151450
Inversion	Chr6	9134480	9247784	OsKitaake06g109600
Inversion	Chr6	9134495	9247793	OsKitaake06g109600
Inversion	Chr4	13830405	14817335	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes