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| Mutant Information |
|---|
| Mutant Name | FN1738-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1738-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 12
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4724085 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 8327910 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g103800 |
| SBS | Chr1 | 14113056 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 18146440 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37734086 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 11319970 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12695931 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 13336567 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21992074 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 12528327 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15057662 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15793997 | C-G | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 7444122 | 7444128 | 6 | |
| Deletion | Chr12 | 12588001 | 12612000 | 23999 | 5 |
| Deletion | Chr6 | 14904263 | 14904264 | 1 | |
| Deletion | Chr2 | 30558601 | 30558602 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 3924803 | 3924806 | 2 |