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Mutant Information

Mutant Name	FN1739-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1739-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11254043 C-A Homo INTERGENIC
SBS Chr1 21400317 C-G Hetero INTERGENIC
SBS Chr1 36071709 G-A Hetero INTRON
SBS Chr2 29310542 G-A Hetero INTERGENIC
SBS Chr3 3183982 A-G Hetero INTERGENIC
SBS Chr4 10935347 G-A Homo INTERGENIC
SBS Chr4 35123734 T-G Hetero INTERGENIC
SBS Chr5 9995410 A-T Hetero INTERGENIC
SBS Chr5 12923229 C-T Hetero INTERGENIC
SBS Chr6 6078686 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 6333229 T-A Hetero INTRON
SBS Chr6 17086669 G-A Homo INTERGENIC
SBS Chr6 26572183 T-C Homo INTERGENIC
SBS Chr7 7340181 C-G Hetero INTERGENIC
SBS Chr7 12297400 T-A Hetero INTERGENIC
SBS Chr7 18867160 G-C Homo INTERGENIC
SBS Chr8 2090668 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 8903382 C-T Hetero UTR_3_PRIME
SBS Chr8 11080430 G-A Hetero INTERGENIC
SBS Chr9 10115547 A-G Homo INTERGENIC
SBS Chr9 19713076 C-G Homo INTERGENIC
SBS Chr10 540681 G-A Hetero INTERGENIC
SBS Chr11 949117 T-C Hetero INTERGENIC
SBS Chr11 3894094 T-C Hetero INTERGENIC
SBS Chr11 4276741 C-T Hetero INTERGENIC
SBS Chr11 4443990 T-C Hetero INTERGENIC
SBS Chr11 9978551 G-T Hetero INTERGENIC
SBS Chr11 16650097 C-T Hetero INTERGENIC
SBS Chr12 6398600 G-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 531907 531912 5 OsKitaake12g006500
Deletion Chr10 589655 589660 5 OsKitaake10g004200
Deletion Chr3 3927001 4086000 158999 18
Deletion Chr12 4366237 4366250 13
Deletion Chr3 6280035 6280155 120
Deletion Chr1 10269037 10269040 3
Deletion Chr11 11114001 11160000 45999 2
Deletion Chr11 13473333 13473335 2
Deletion Chr11 15432925 15432927 2
Deletion Chr4 19432001 19446000 13999 OsKitaake04g099601
Deletion Chr7 20493871 20493887 16
Deletion Chr11 25164760 25164762 2
Deletion Chr7 27588115 27588116 1
Deletion Chr1 30879432 30879440 8 OsKitaake01g306600

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 9208529 9208535 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11254043	C-A	Homo	INTERGENIC
SBS	Chr1	21400317	C-G	Hetero	INTERGENIC
SBS	Chr1	36071709	G-A	Hetero	INTRON
SBS	Chr2	29310542	G-A	Hetero	INTERGENIC
SBS	Chr3	3183982	A-G	Hetero	INTERGENIC
SBS	Chr4	10935347	G-A	Homo	INTERGENIC
SBS	Chr4	35123734	T-G	Hetero	INTERGENIC
SBS	Chr5	9995410	A-T	Hetero	INTERGENIC
SBS	Chr5	12923229	C-T	Hetero	INTERGENIC
SBS	Chr6	6078686	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	6333229	T-A	Hetero	INTRON
SBS	Chr6	17086669	G-A	Homo	INTERGENIC
SBS	Chr6	26572183	T-C	Homo	INTERGENIC
SBS	Chr7	7340181	C-G	Hetero	INTERGENIC
SBS	Chr7	12297400	T-A	Hetero	INTERGENIC
SBS	Chr7	18867160	G-C	Homo	INTERGENIC
SBS	Chr8	2090668	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	8903382	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	11080430	G-A	Hetero	INTERGENIC
SBS	Chr9	10115547	A-G	Homo	INTERGENIC
SBS	Chr9	19713076	C-G	Homo	INTERGENIC
SBS	Chr10	540681	G-A	Hetero	INTERGENIC
SBS	Chr11	949117	T-C	Hetero	INTERGENIC
SBS	Chr11	3894094	T-C	Hetero	INTERGENIC
SBS	Chr11	4276741	C-T	Hetero	INTERGENIC
SBS	Chr11	4443990	T-C	Hetero	INTERGENIC
SBS	Chr11	9978551	G-T	Hetero	INTERGENIC
SBS	Chr11	16650097	C-T	Hetero	INTERGENIC
SBS	Chr12	6398600	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	531907	531912	5	OsKitaake12g006500
Deletion	Chr10	589655	589660	5	OsKitaake10g004200
Deletion	Chr3	3927001	4086000	158999	18
Deletion	Chr12	4366237	4366250	13
Deletion	Chr3	6280035	6280155	120
Deletion	Chr1	10269037	10269040	3
Deletion	Chr11	11114001	11160000	45999	2
Deletion	Chr11	13473333	13473335	2
Deletion	Chr11	15432925	15432927	2
Deletion	Chr4	19432001	19446000	13999	OsKitaake04g099601
Deletion	Chr7	20493871	20493887	16
Deletion	Chr11	25164760	25164762	2
Deletion	Chr7	27588115	27588116	1
Deletion	Chr1	30879432	30879440	8	OsKitaake01g306600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes