Search Kitaake

Mutant Information

Mutant Name	FN1741-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1741-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (13.33% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr3 3821561 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g054000
SBS Chr3 14469209 T-C Homo INTERGENIC
SBS Chr4 2842266 C-T Hetero INTERGENIC
SBS Chr4 24411945 C-T Hetero INTERGENIC
SBS Chr5 3944228 A-G Hetero INTRON
SBS Chr5 8067192 C-G Hetero INTERGENIC
SBS Chr5 15463241 T-G Hetero INTERGENIC
SBS Chr5 16920718 C-T Hetero INTERGENIC
SBS Chr7 7712309 G-A Hetero INTERGENIC
SBS Chr7 13681125 A-C Hetero INTERGENIC
SBS Chr7 15004812 C-T Hetero INTERGENIC
SBS Chr7 17798295 G-A Hetero INTERGENIC
SBS Chr8 77471 C-A Hetero INTERGENIC
SBS Chr8 17237432 C-T Homo INTERGENIC
SBS Chr8 17589547 A-T Homo INTERGENIC
SBS Chr8 24088073 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g186000
SBS Chr9 5724497 C-T Hetero INTERGENIC
SBS Chr9 16463453 C-T Hetero INTERGENIC
SBS Chr9 18706267 G-T Hetero INTERGENIC
SBS Chr10 9604502 G-A Hetero INTERGENIC
SBS Chr11 2039643 A-T Homo INTRON
SBS Chr11 14841237 C-T Hetero INTERGENIC
SBS Chr11 27427072 C-T Homo INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 275524 275535 11
Deletion Chr2 2243765 2243779 14
Deletion Chr11 2637678 2637679 1
Deletion Chr11 5990356 5990363 7
Deletion Chr7 6052056 6052074 18
Deletion Chr8 7989770 7989771 1
Deletion Chr12 12216428 12216431 3 OsKitaake12g106000
Deletion Chr3 15581471 15581472 1
Deletion Chr11 19987001 20019000 31999 4
Deletion Chr2 20450259 20450267 8
Deletion Chr8 21899138 21899150 12
Deletion Chr3 31066161 31066162 1 OsKitaake03g326100
Deletion Chr1 35763581 35763583 2 OsKitaake01g378700

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 3526599 3526604 4
Insertion Chr9 22665767 22665770 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9530802 10340171 OsKitaake10g060100
Inversion Chr12 12043249 12088575 OsKitaake12g105200

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12043198 Chr3 14468190
Translocation Chr12 12238974 Chr3 14468461 OsKitaake12g106100
Translocation Chr10 19641596 Chr4 32752743 OsKitaake10g145100
Translocation Chr10 19641765 Chr4 32752999 OsKitaake10g145100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr3	3821561	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g054000
SBS	Chr3	14469209	T-C	Homo	INTERGENIC
SBS	Chr4	2842266	C-T	Hetero	INTERGENIC
SBS	Chr4	24411945	C-T	Hetero	INTERGENIC
SBS	Chr5	3944228	A-G	Hetero	INTRON
SBS	Chr5	8067192	C-G	Hetero	INTERGENIC
SBS	Chr5	15463241	T-G	Hetero	INTERGENIC
SBS	Chr5	16920718	C-T	Hetero	INTERGENIC
SBS	Chr7	7712309	G-A	Hetero	INTERGENIC
SBS	Chr7	13681125	A-C	Hetero	INTERGENIC
SBS	Chr7	15004812	C-T	Hetero	INTERGENIC
SBS	Chr7	17798295	G-A	Hetero	INTERGENIC
SBS	Chr8	77471	C-A	Hetero	INTERGENIC
SBS	Chr8	17237432	C-T	Homo	INTERGENIC
SBS	Chr8	17589547	A-T	Homo	INTERGENIC
SBS	Chr8	24088073	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g186000
SBS	Chr9	5724497	C-T	Hetero	INTERGENIC
SBS	Chr9	16463453	C-T	Hetero	INTERGENIC
SBS	Chr9	18706267	G-T	Hetero	INTERGENIC
SBS	Chr10	9604502	G-A	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Homo	INTRON
SBS	Chr11	14841237	C-T	Hetero	INTERGENIC
SBS	Chr11	27427072	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	275524	275535	11
Deletion	Chr2	2243765	2243779	14
Deletion	Chr11	2637678	2637679	1
Deletion	Chr11	5990356	5990363	7
Deletion	Chr7	6052056	6052074	18
Deletion	Chr8	7989770	7989771	1
Deletion	Chr12	12216428	12216431	3	OsKitaake12g106000
Deletion	Chr3	15581471	15581472	1
Deletion	Chr11	19987001	20019000	31999	4
Deletion	Chr2	20450259	20450267	8
Deletion	Chr8	21899138	21899150	12
Deletion	Chr3	31066161	31066162	1	OsKitaake03g326100
Deletion	Chr1	35763581	35763583	2	OsKitaake01g378700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9530802	10340171	OsKitaake10g060100
Inversion	Chr12	12043249	12088575	OsKitaake12g105200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes