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Mutant Information

Mutant Name	FN1742-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1742-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18183846 G-C Hetero INTERGENIC
SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr4 16632671 G-A Hetero INTERGENIC
SBS Chr4 35951786 T-A Homo INTERGENIC
SBS Chr5 8664466 A-T Hetero INTERGENIC
SBS Chr5 9688244 C-G Hetero INTERGENIC
SBS Chr5 19748090 A-C Homo INTERGENIC
SBS Chr5 26841543 T-A Hetero INTERGENIC
SBS Chr5 29443117 C-T Hetero INTERGENIC
SBS Chr6 4048606 C-T Hetero INTERGENIC
SBS Chr6 17056288 C-T Hetero INTERGENIC
SBS Chr7 18092223 T-A Homo INTRON
SBS Chr8 11844132 C-T Hetero INTERGENIC
SBS Chr8 26687261 C-T Hetero UTR_5_PRIME
SBS Chr10 3273868 T-A Hetero INTERGENIC
SBS Chr11 14324833 A-C Homo UTR_3_PRIME
SBS Chr12 557563 T-G Hetero INTRON
SBS Chr12 4209633 G-A Hetero INTERGENIC
SBS Chr12 23421316 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5185593 5185599 6
Deletion Chr8 6002673 6002675 2
Deletion Chr2 6247904 6247905 1
Deletion Chr3 8404862 8404863 1
Deletion Chr11 10244880 10244889 9
Deletion Chr10 12071645 12071647 2
Deletion Chr2 13844476 13844477 1
Deletion Chr8 15449277 15449278 1
Deletion Chr7 19563975 19563984 9
Deletion Chr7 20278309 20278318 9
Deletion Chr11 27230200 27230204 4 OsKitaake11g222500
Deletion Chr8 27499542 27499544 2
Deletion Chr1 34224147 34224155 8
Deletion Chr1 40522060 40522061 1
Deletion Chr1 41404001 41424000 19999 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7733777 7733780 2
Insertion Chr1 27872045 27872048 2
Insertion Chr7 23500551 23500554 2
Insertion Chr7 25547773 25547775 1
Insertion Chr7 28346703 28346706 2
Insertion Chr12 11661870 11661872 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 6064586 6361522
Inversion Chr7 20835253 21230583
Inversion Chr7 20835403 20929920

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9425641 Chr7 11084611 OsKitaake11g098700
Translocation Chr7 10060680 Chr1 2657888 2
Translocation Chr7 10062155 Chr1 2657879 2
Translocation Chr10 15082363 Chr7 21230705 OsKitaake10g094800
Translocation Chr10 15082558 Chr7 20912274 OsKitaake10g094800
Translocation Chr7 20912273 Chr1 41424594
Translocation Chr11 21375540 Chr7 20912277
Translocation Chr11 21375858 Chr10 15082557 OsKitaake10g094800
Translocation Chr8 29169436 Chr1 41415369 OsKitaake08g253600
Translocation Chr8 29169440 Chr3 37420338 OsKitaake08g253600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18183846	G-C	Hetero	INTERGENIC
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr4	16632671	G-A	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr5	8664466	A-T	Hetero	INTERGENIC
SBS	Chr5	9688244	C-G	Hetero	INTERGENIC
SBS	Chr5	19748090	A-C	Homo	INTERGENIC
SBS	Chr5	26841543	T-A	Hetero	INTERGENIC
SBS	Chr5	29443117	C-T	Hetero	INTERGENIC
SBS	Chr6	4048606	C-T	Hetero	INTERGENIC
SBS	Chr6	17056288	C-T	Hetero	INTERGENIC
SBS	Chr7	18092223	T-A	Homo	INTRON
SBS	Chr8	11844132	C-T	Hetero	INTERGENIC
SBS	Chr8	26687261	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	3273868	T-A	Hetero	INTERGENIC
SBS	Chr11	14324833	A-C	Homo	UTR_3_PRIME
SBS	Chr12	557563	T-G	Hetero	INTRON
SBS	Chr12	4209633	G-A	Hetero	INTERGENIC
SBS	Chr12	23421316	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5185593	5185599	6
Deletion	Chr8	6002673	6002675	2
Deletion	Chr2	6247904	6247905	1
Deletion	Chr3	8404862	8404863	1
Deletion	Chr11	10244880	10244889	9
Deletion	Chr10	12071645	12071647	2
Deletion	Chr2	13844476	13844477	1
Deletion	Chr8	15449277	15449278	1
Deletion	Chr7	19563975	19563984	9
Deletion	Chr7	20278309	20278318	9
Deletion	Chr11	27230200	27230204	4	OsKitaake11g222500
Deletion	Chr8	27499542	27499544	2
Deletion	Chr1	34224147	34224155	8
Deletion	Chr1	40522060	40522061	1
Deletion	Chr1	41404001	41424000	19999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6064586	6361522
Inversion	Chr7	20835253	21230583
Inversion	Chr7	20835403	20929920

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes