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| Mutant Information |
|---|
| Mutant Name | FN1744-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1744-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 16
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32539797 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 26582039 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 32739327 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1803755 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8603517 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 9024449 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9071741 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27304866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14600447 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5995325 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17208967 | G-A | Hetero | STOP_GAINED | OsKitaake09g129000 |
| SBS | Chr10 | 13278477 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4183409 | G-A | Homo | INTRON | |
| SBS | Chr12 | 10256463 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15735891 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22083388 | T-C | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1085504 | 1085508 | 4 | |
| Deletion | Chr9 | 10664741 | 10664746 | 5 | |
| Deletion | Chr12 | 22101895 | 22101897 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 27758440 | 27758443 | 2 | |
| Insertion | Chr4 | 4414990 | 4414992 | 1 |