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Mutant Information

Mutant Name	FN1745-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1745-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8816887 C-T Homo INTERGENIC
SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Hetero INTRON
SBS Chr1 26400879 C-T Hetero INTERGENIC
SBS Chr1 37382671 G-A Homo INTERGENIC
SBS Chr1 39157266 T-A Homo INTERGENIC
SBS Chr3 10480700 A-G Hetero INTRON
SBS Chr3 20292230 C-T Hetero INTERGENIC
SBS Chr3 29508331 T-A Homo INTERGENIC
SBS Chr4 2963205 T-C Homo INTERGENIC
SBS Chr4 3968406 A-T Hetero INTERGENIC
SBS Chr4 18107840 G-C Homo INTERGENIC
SBS Chr5 11133151 G-A Homo INTERGENIC
SBS Chr5 15398121 G-A Homo INTERGENIC
SBS Chr5 18877275 C-A Hetero INTERGENIC
SBS Chr5 29286640 G-A Hetero INTERGENIC
SBS Chr6 8637081 T-A Homo INTERGENIC
SBS Chr6 18839014 T-C Homo INTERGENIC
SBS Chr6 20601688 C-T Homo INTERGENIC
SBS Chr6 28012337 G-A Homo INTERGENIC
SBS Chr6 29925783 T-C Homo INTERGENIC
SBS Chr7 3869157 A-T Hetero INTERGENIC
SBS Chr7 12779030 T-G Hetero INTERGENIC
SBS Chr7 25838522 C-A Hetero INTERGENIC
SBS Chr8 3003956 A-G Homo INTERGENIC
SBS Chr8 11222878 C-G Hetero INTERGENIC
SBS Chr9 14930200 C-T Homo INTRON
SBS Chr10 4644955 C-A Hetero INTERGENIC
SBS Chr10 6120971 T-C Hetero INTERGENIC
SBS Chr10 22114982 G-A Hetero UTR_5_PRIME
SBS Chr11 19416746 G-A Hetero INTERGENIC
SBS Chr11 25606278 T-C Homo INTERGENIC
SBS Chr12 1916848 C-T Homo INTERGENIC
SBS Chr12 8344480 A-G Hetero INTRON
SBS Chr12 13257137 G-T Hetero INTERGENIC
SBS Chr12 13257138 A-T Hetero INTERGENIC
SBS Chr12 20396417 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 7809824 7809828 4
Deletion Chr1 17283622 17284286 664
Deletion Chr2 18192337 18192342 5
Deletion Chr6 26224618 26224622 4
Deletion Chr6 29927066 29927075 9 OsKitaake06g280300
Deletion Chr6 30306375 30306377 2
Deletion Chr2 30889667 30889669 2
Deletion Chr3 31630038 31630039 1
Deletion Chr1 36101278 36101283 5
Deletion Chr1 37691761 37691765 4 OsKitaake01g402300
Deletion Chr1 42831138 42831140 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 24846096 24846099 2
Insertion Chr11 6310156 6310159 2
Insertion Chr11 13627337 13627341 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11063034 11068069
Inversion Chr10 11063036 11068075
Inversion Chr2 29598305 29650048 OsKitaake02g298600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13582641 Chr4 9661049
Translocation Chr7 16365141 Chr2 29598296 OsKitaake02g298600
Translocation Chr12 20242548 Chr9 17486261 OsKitaake09g131600
Translocation Chr12 20244256 Chr9 17486258 OsKitaake09g131600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8816887	C-T	Homo	INTERGENIC
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Hetero	INTRON
SBS	Chr1	26400879	C-T	Hetero	INTERGENIC
SBS	Chr1	37382671	G-A	Homo	INTERGENIC
SBS	Chr1	39157266	T-A	Homo	INTERGENIC
SBS	Chr3	10480700	A-G	Hetero	INTRON
SBS	Chr3	20292230	C-T	Hetero	INTERGENIC
SBS	Chr3	29508331	T-A	Homo	INTERGENIC
SBS	Chr4	2963205	T-C	Homo	INTERGENIC
SBS	Chr4	3968406	A-T	Hetero	INTERGENIC
SBS	Chr4	18107840	G-C	Homo	INTERGENIC
SBS	Chr5	11133151	G-A	Homo	INTERGENIC
SBS	Chr5	15398121	G-A	Homo	INTERGENIC
SBS	Chr5	18877275	C-A	Hetero	INTERGENIC
SBS	Chr5	29286640	G-A	Hetero	INTERGENIC
SBS	Chr6	8637081	T-A	Homo	INTERGENIC
SBS	Chr6	18839014	T-C	Homo	INTERGENIC
SBS	Chr6	20601688	C-T	Homo	INTERGENIC
SBS	Chr6	28012337	G-A	Homo	INTERGENIC
SBS	Chr6	29925783	T-C	Homo	INTERGENIC
SBS	Chr7	3869157	A-T	Hetero	INTERGENIC
SBS	Chr7	12779030	T-G	Hetero	INTERGENIC
SBS	Chr7	25838522	C-A	Hetero	INTERGENIC
SBS	Chr8	3003956	A-G	Homo	INTERGENIC
SBS	Chr8	11222878	C-G	Hetero	INTERGENIC
SBS	Chr9	14930200	C-T	Homo	INTRON
SBS	Chr10	4644955	C-A	Hetero	INTERGENIC
SBS	Chr10	6120971	T-C	Hetero	INTERGENIC
SBS	Chr10	22114982	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	19416746	G-A	Hetero	INTERGENIC
SBS	Chr11	25606278	T-C	Homo	INTERGENIC
SBS	Chr12	1916848	C-T	Homo	INTERGENIC
SBS	Chr12	8344480	A-G	Hetero	INTRON
SBS	Chr12	13257137	G-T	Hetero	INTERGENIC
SBS	Chr12	13257138	A-T	Hetero	INTERGENIC
SBS	Chr12	20396417	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	7809824	7809828	4
Deletion	Chr1	17283622	17284286	664
Deletion	Chr2	18192337	18192342	5
Deletion	Chr6	26224618	26224622	4
Deletion	Chr6	29927066	29927075	9	OsKitaake06g280300
Deletion	Chr6	30306375	30306377	2
Deletion	Chr2	30889667	30889669	2
Deletion	Chr3	31630038	31630039	1
Deletion	Chr1	36101278	36101283	5
Deletion	Chr1	37691761	37691765	4	OsKitaake01g402300
Deletion	Chr1	42831138	42831140	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11063034	11068069
Inversion	Chr10	11063036	11068075
Inversion	Chr2	29598305	29650048	OsKitaake02g298600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes