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Mutant Information

Mutant Name	FN1746-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1746-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19300730 C-T Hetero INTERGENIC
SBS Chr1 22539084 C-A Homo INTERGENIC
SBS Chr1 31458030 T-C Homo INTERGENIC
SBS Chr2 323649 A-T Homo INTERGENIC
SBS Chr2 11383201 C-T Hetero INTERGENIC
SBS Chr2 14160171 A-G Hetero INTERGENIC
SBS Chr2 14582934 G-A Hetero INTERGENIC
SBS Chr3 13320625 G-A Homo INTERGENIC
SBS Chr3 26134771 G-A Homo INTERGENIC
SBS Chr4 6124754 G-A Hetero INTERGENIC
SBS Chr4 25107158 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g168700
SBS Chr4 26858225 G-A Hetero START_GAINED
SBS Chr5 17769030 C-G Hetero INTERGENIC
SBS Chr6 8464289 A-G Homo INTERGENIC
SBS Chr6 16479245 A-G Hetero INTRON
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr8 445270 G-T Hetero INTERGENIC
SBS Chr8 5079242 C-A Hetero INTERGENIC
SBS Chr8 25260029 T-C Homo INTERGENIC
SBS Chr9 21222706 G-A Homo INTERGENIC
SBS Chr10 1275873 T-C Hetero INTERGENIC
SBS Chr10 1325066 T-G Hetero INTERGENIC
SBS Chr10 4757150 T-G Hetero INTERGENIC
SBS Chr10 10087049 C-T Hetero INTERGENIC
SBS Chr11 20802804 C-G Hetero INTERGENIC
SBS Chr12 1833320 T-G Homo INTERGENIC
SBS Chr12 7146315 T-C Hetero INTERGENIC
SBS Chr12 11243029 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 506768 506771 3
Deletion Chr8 3291583 3291594 11
Deletion Chr12 4112270 4112272 2
Deletion Chr10 5493036 5493039 3
Deletion Chr4 8617247 8617252 5
Deletion Chr9 13831157 13831160 3
Deletion Chr10 16074655 16074663 8
Deletion Chr12 20394430 20394436 6
Deletion Chr11 25498856 25498857 1
Deletion Chr1 26154443 26154444 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 21854946 21854950 3
Insertion Chr7 5316716 5316719 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 9647719 9735427

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19300730	C-T	Hetero	INTERGENIC
SBS	Chr1	22539084	C-A	Homo	INTERGENIC
SBS	Chr1	31458030	T-C	Homo	INTERGENIC
SBS	Chr2	323649	A-T	Homo	INTERGENIC
SBS	Chr2	11383201	C-T	Hetero	INTERGENIC
SBS	Chr2	14160171	A-G	Hetero	INTERGENIC
SBS	Chr2	14582934	G-A	Hetero	INTERGENIC
SBS	Chr3	13320625	G-A	Homo	INTERGENIC
SBS	Chr3	26134771	G-A	Homo	INTERGENIC
SBS	Chr4	6124754	G-A	Hetero	INTERGENIC
SBS	Chr4	25107158	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g168700
SBS	Chr4	26858225	G-A	Hetero	START_GAINED
SBS	Chr5	17769030	C-G	Hetero	INTERGENIC
SBS	Chr6	8464289	A-G	Homo	INTERGENIC
SBS	Chr6	16479245	A-G	Hetero	INTRON
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr8	445270	G-T	Hetero	INTERGENIC
SBS	Chr8	5079242	C-A	Hetero	INTERGENIC
SBS	Chr8	25260029	T-C	Homo	INTERGENIC
SBS	Chr9	21222706	G-A	Homo	INTERGENIC
SBS	Chr10	1275873	T-C	Hetero	INTERGENIC
SBS	Chr10	1325066	T-G	Hetero	INTERGENIC
SBS	Chr10	4757150	T-G	Hetero	INTERGENIC
SBS	Chr10	10087049	C-T	Hetero	INTERGENIC
SBS	Chr11	20802804	C-G	Hetero	INTERGENIC
SBS	Chr12	1833320	T-G	Homo	INTERGENIC
SBS	Chr12	7146315	T-C	Hetero	INTERGENIC
SBS	Chr12	11243029	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	506768	506771	3
Deletion	Chr8	3291583	3291594	11
Deletion	Chr12	4112270	4112272	2
Deletion	Chr10	5493036	5493039	3
Deletion	Chr4	8617247	8617252	5
Deletion	Chr9	13831157	13831160	3
Deletion	Chr10	16074655	16074663	8
Deletion	Chr12	20394430	20394436	6
Deletion	Chr11	25498856	25498857	1
Deletion	Chr1	26154443	26154444	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9647719	9735427

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes