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Mutant Information

Mutant Name	FN1748-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1748-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr3 3116601 A-T Homo INTERGENIC
SBS Chr3 3546745 A-T Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 26378405 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 26521982 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr3 29323380 A-G Homo INTERGENIC
SBS Chr4 784888 C-G Hetero INTERGENIC
SBS Chr4 3320920 C-T Hetero INTERGENIC
SBS Chr4 4246713 A-T Hetero INTERGENIC
SBS Chr4 10468766 C-G Hetero INTERGENIC
SBS Chr4 34713563 G-A Homo INTERGENIC
SBS Chr5 10807745 G-C Hetero INTERGENIC
SBS Chr5 23661291 T-A Homo INTERGENIC
SBS Chr6 6810377 G-A Hetero INTERGENIC
SBS Chr6 12491497 C-T Hetero INTERGENIC
SBS Chr6 16898723 A-G Hetero INTERGENIC
SBS Chr6 20977310 T-G Hetero INTERGENIC
SBS Chr6 23623752 C-T Hetero INTRON
SBS Chr7 5490541 T-C Homo INTERGENIC
SBS Chr7 6804688 T-C Hetero INTERGENIC
SBS Chr8 2190978 C-G Hetero INTRON
SBS Chr8 6486571 C-G Homo INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr9 4029981 G-A Hetero INTERGENIC
SBS Chr10 10504092 G-A Homo UTR_3_PRIME
SBS Chr10 12958112 G-A Hetero INTERGENIC
SBS Chr11 14231514 G-C Hetero INTERGENIC
SBS Chr11 20170841 C-T Hetero INTERGENIC
SBS Chr11 21427474 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 433256 433258 2
Deletion Chr5 735001 758000 22999 5
Deletion Chr4 5238532 5238539 7
Deletion Chr7 5295296 5295297 1
Deletion Chr1 5585144 5585146 2
Deletion Chr4 6809771 6809774 3
Deletion Chr10 7529229 7529230 1
Deletion Chr1 8097530 8097532 2
Deletion Chr3 15692651 15692656 5
Deletion Chr4 19100944 19100956 12
Deletion Chr1 30576073 30576074 1 OsKitaake01g302600
Deletion Chr4 33357735 33357742 7
Deletion Chr4 35457970 35457974 4
Deletion Chr2 36708417 36708418 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 32959905 32959907 1
Insertion Chr6 23920093 23920096 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 16662438 16884786

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr3	3116601	A-T	Homo	INTERGENIC
SBS	Chr3	3546745	A-T	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	26378405	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	26521982	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr3	29323380	A-G	Homo	INTERGENIC
SBS	Chr4	784888	C-G	Hetero	INTERGENIC
SBS	Chr4	3320920	C-T	Hetero	INTERGENIC
SBS	Chr4	4246713	A-T	Hetero	INTERGENIC
SBS	Chr4	10468766	C-G	Hetero	INTERGENIC
SBS	Chr4	34713563	G-A	Homo	INTERGENIC
SBS	Chr5	10807745	G-C	Hetero	INTERGENIC
SBS	Chr5	23661291	T-A	Homo	INTERGENIC
SBS	Chr6	6810377	G-A	Hetero	INTERGENIC
SBS	Chr6	12491497	C-T	Hetero	INTERGENIC
SBS	Chr6	16898723	A-G	Hetero	INTERGENIC
SBS	Chr6	20977310	T-G	Hetero	INTERGENIC
SBS	Chr6	23623752	C-T	Hetero	INTRON
SBS	Chr7	5490541	T-C	Homo	INTERGENIC
SBS	Chr7	6804688	T-C	Hetero	INTERGENIC
SBS	Chr8	2190978	C-G	Hetero	INTRON
SBS	Chr8	6486571	C-G	Homo	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr9	4029981	G-A	Hetero	INTERGENIC
SBS	Chr10	10504092	G-A	Homo	UTR_3_PRIME
SBS	Chr10	12958112	G-A	Hetero	INTERGENIC
SBS	Chr11	14231514	G-C	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Hetero	INTERGENIC
SBS	Chr11	21427474	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	433256	433258	2
Deletion	Chr5	735001	758000	22999	5
Deletion	Chr4	5238532	5238539	7
Deletion	Chr7	5295296	5295297	1
Deletion	Chr1	5585144	5585146	2
Deletion	Chr4	6809771	6809774	3
Deletion	Chr10	7529229	7529230	1
Deletion	Chr1	8097530	8097532	2
Deletion	Chr3	15692651	15692656	5
Deletion	Chr4	19100944	19100956	12
Deletion	Chr1	30576073	30576074	1	OsKitaake01g302600
Deletion	Chr4	33357735	33357742	7
Deletion	Chr4	35457970	35457974	4
Deletion	Chr2	36708417	36708418	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16662438	16884786

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes