Search Kitaake

Mutant Information

Mutant Name	FN1750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1750-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13430441 T-A Hetero INTERGENIC
SBS Chr1 14024803 T-C Hetero INTERGENIC
SBS Chr1 29136233 A-G Homo INTERGENIC
SBS Chr1 30012321 C-G Homo SYNONYMOUS_CODING
SBS Chr1 33157282 A-G Homo INTRON
SBS Chr1 42363228 C-G Hetero INTRON
SBS Chr2 25906023 G-A Hetero INTERGENIC
SBS Chr2 31588843 C-T Hetero INTERGENIC
SBS Chr3 3314818 C-T Hetero UTR_3_PRIME
SBS Chr3 3418259 C-T Hetero INTERGENIC
SBS Chr3 17843368 T-A Hetero INTERGENIC
SBS Chr3 18131316 T-C Hetero UTR_3_PRIME
SBS Chr3 29828190 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g311800
SBS Chr4 4609196 T-A Homo INTERGENIC
SBS Chr5 27110763 G-A Hetero UTR_5_PRIME
SBS Chr6 893934 G-A Homo INTERGENIC
SBS Chr6 16941596 G-A Homo INTERGENIC
SBS Chr6 29811377 A-T Hetero INTERGENIC
SBS Chr7 7935532 C-A Homo INTERGENIC
SBS Chr7 18664277 A-G Hetero INTERGENIC
SBS Chr8 1885509 C-T Hetero INTERGENIC
SBS Chr8 8031330 G-A Homo INTERGENIC
SBS Chr8 11278546 C-T Homo INTERGENIC
SBS Chr9 459299 C-T Hetero INTRON
SBS Chr10 13617941 A-T Homo INTERGENIC
SBS Chr11 1306332 C-T Homo SYNONYMOUS_CODING
SBS Chr11 1581510 T-C Hetero INTERGENIC
SBS Chr11 22086353 A-T Homo INTRON
SBS Chr12 13535149 A-G Homo INTERGENIC
SBS Chr12 16232702 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 291001 306000 14999 4
Deletion Chr2 2011462 2011464 2
Deletion Chr10 3158986 3158994 8
Deletion Chr7 7422331 7422333 2
Deletion Chr8 8473208 8473217 9
Deletion Chr6 12930716 12930717 1
Deletion Chr7 13451630 13451639 9
Deletion Chr7 21272001 21337000 64999 9
Deletion Chr4 24408722 24408724 2
Deletion Chr8 24789871 24789873 2
Deletion Chr8 25850085 25850089 4
Deletion Chr11 26585071 26585073 2 OsKitaake11g216200
Deletion Chr1 31096643 31096644 1
Deletion Chr1 39759588 39759589 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 32639038 32641375 OsKitaake03g345600
Inversion Chr3 32640866 32641392

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 290995 Chr4 27067673 OsKitaake08g004000
Translocation Chr8 312859 Chr4 27068019
Translocation Chr12 18062120 Chr1 26666611 OsKitaake12g133200
Translocation Chr12 18062185 Chr1 26666474 OsKitaake12g133200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13430441	T-A	Hetero	INTERGENIC
SBS	Chr1	14024803	T-C	Hetero	INTERGENIC
SBS	Chr1	29136233	A-G	Homo	INTERGENIC
SBS	Chr1	30012321	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	33157282	A-G	Homo	INTRON
SBS	Chr1	42363228	C-G	Hetero	INTRON
SBS	Chr2	25906023	G-A	Hetero	INTERGENIC
SBS	Chr2	31588843	C-T	Hetero	INTERGENIC
SBS	Chr3	3314818	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	3418259	C-T	Hetero	INTERGENIC
SBS	Chr3	17843368	T-A	Hetero	INTERGENIC
SBS	Chr3	18131316	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	29828190	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g311800
SBS	Chr4	4609196	T-A	Homo	INTERGENIC
SBS	Chr5	27110763	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	893934	G-A	Homo	INTERGENIC
SBS	Chr6	16941596	G-A	Homo	INTERGENIC
SBS	Chr6	29811377	A-T	Hetero	INTERGENIC
SBS	Chr7	7935532	C-A	Homo	INTERGENIC
SBS	Chr7	18664277	A-G	Hetero	INTERGENIC
SBS	Chr8	1885509	C-T	Hetero	INTERGENIC
SBS	Chr8	8031330	G-A	Homo	INTERGENIC
SBS	Chr8	11278546	C-T	Homo	INTERGENIC
SBS	Chr9	459299	C-T	Hetero	INTRON
SBS	Chr10	13617941	A-T	Homo	INTERGENIC
SBS	Chr11	1306332	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	1581510	T-C	Hetero	INTERGENIC
SBS	Chr11	22086353	A-T	Homo	INTRON
SBS	Chr12	13535149	A-G	Homo	INTERGENIC
SBS	Chr12	16232702	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	291001	306000	14999	4
Deletion	Chr2	2011462	2011464	2
Deletion	Chr10	3158986	3158994	8
Deletion	Chr7	7422331	7422333	2
Deletion	Chr8	8473208	8473217	9
Deletion	Chr6	12930716	12930717	1
Deletion	Chr7	13451630	13451639	9
Deletion	Chr7	21272001	21337000	64999	9
Deletion	Chr4	24408722	24408724	2
Deletion	Chr8	24789871	24789873	2
Deletion	Chr8	25850085	25850089	4
Deletion	Chr11	26585071	26585073	2	OsKitaake11g216200
Deletion	Chr1	31096643	31096644	1
Deletion	Chr1	39759588	39759589	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	32639038	32641375	OsKitaake03g345600
Inversion	Chr3	32640866	32641392

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes