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Mutant Information

Mutant Name	FN1751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1751-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5008421 T-A Hetero INTERGENIC
SBS Chr1 24046070 T-C Hetero INTERGENIC
SBS Chr2 2906447 A-C Homo INTERGENIC
SBS Chr2 2906448 C-A Homo INTERGENIC
SBS Chr3 17686540 G-A Homo INTERGENIC
SBS Chr4 35887642 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 6751348 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g068200
SBS Chr5 22317301 T-G Homo INTERGENIC
SBS Chr5 24803498 C-G Homo INTERGENIC
SBS Chr5 27793703 A-T Homo INTRON
SBS Chr6 5740733 C-T Hetero INTERGENIC
SBS Chr6 15269154 G-T Hetero INTERGENIC
SBS Chr6 26818305 T-C Hetero INTERGENIC
SBS Chr7 8388953 C-T Hetero INTERGENIC
SBS Chr7 8585294 C-T Hetero INTERGENIC
SBS Chr7 14592809 C-T Homo INTERGENIC
SBS Chr7 22548609 A-T Homo INTERGENIC
SBS Chr8 3434290 T-G Homo INTERGENIC
SBS Chr8 19905825 A-T Homo INTERGENIC
SBS Chr9 16374334 C-A Homo INTERGENIC
SBS Chr10 1389399 C-G Hetero INTERGENIC
SBS Chr10 6179078 G-A Hetero INTERGENIC
SBS Chr10 7470293 T-C Homo INTERGENIC
SBS Chr10 9512960 C-T Hetero INTERGENIC
SBS Chr11 5854926 A-G Hetero SYNONYMOUS_CODING

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4481575 4481591 16
Deletion Chr12 13177001 13202000 24999 8
Deletion Chr7 13725001 13729000 3999
Deletion Chr4 16341491 16341492 1
Deletion Chr10 16818798 16818809 11
Deletion Chr1 18216909 18216920 11
Deletion Chr3 20619608 20619619 11
Deletion Chr6 21335801 21335802 1
Deletion Chr3 24386938 24386939 1 OsKitaake03g261000
Deletion Chr11 26750692 26750697 5
Deletion Chr6 27915110 27915111 1
Deletion Chr4 31865661 31865662 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32216850 32216853 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 20461577 20610789 2
Inversion Chr4 20461586 20612868 2
Inversion Chr4 24249817 24540300 OsKitaake04g156000
Inversion Chr4 24251592 24889458 OsKitaake04g165800
Inversion Chr4 24540312 24871779
Inversion Chr11 28717241 28788981 OsKitaake11g235600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 28717236 Chr4 9530071 OsKitaake04g049400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5008421	T-A	Hetero	INTERGENIC
SBS	Chr1	24046070	T-C	Hetero	INTERGENIC
SBS	Chr2	2906447	A-C	Homo	INTERGENIC
SBS	Chr2	2906448	C-A	Homo	INTERGENIC
SBS	Chr3	17686540	G-A	Homo	INTERGENIC
SBS	Chr4	35887642	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	6751348	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g068200
SBS	Chr5	22317301	T-G	Homo	INTERGENIC
SBS	Chr5	24803498	C-G	Homo	INTERGENIC
SBS	Chr5	27793703	A-T	Homo	INTRON
SBS	Chr6	5740733	C-T	Hetero	INTERGENIC
SBS	Chr6	15269154	G-T	Hetero	INTERGENIC
SBS	Chr6	26818305	T-C	Hetero	INTERGENIC
SBS	Chr7	8388953	C-T	Hetero	INTERGENIC
SBS	Chr7	8585294	C-T	Hetero	INTERGENIC
SBS	Chr7	14592809	C-T	Homo	INTERGENIC
SBS	Chr7	22548609	A-T	Homo	INTERGENIC
SBS	Chr8	3434290	T-G	Homo	INTERGENIC
SBS	Chr8	19905825	A-T	Homo	INTERGENIC
SBS	Chr9	16374334	C-A	Homo	INTERGENIC
SBS	Chr10	1389399	C-G	Hetero	INTERGENIC
SBS	Chr10	6179078	G-A	Hetero	INTERGENIC
SBS	Chr10	7470293	T-C	Homo	INTERGENIC
SBS	Chr10	9512960	C-T	Hetero	INTERGENIC
SBS	Chr11	5854926	A-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4481575	4481591	16
Deletion	Chr12	13177001	13202000	24999	8
Deletion	Chr7	13725001	13729000	3999
Deletion	Chr4	16341491	16341492	1
Deletion	Chr10	16818798	16818809	11
Deletion	Chr1	18216909	18216920	11
Deletion	Chr3	20619608	20619619	11
Deletion	Chr6	21335801	21335802	1
Deletion	Chr3	24386938	24386939	1	OsKitaake03g261000
Deletion	Chr11	26750692	26750697	5
Deletion	Chr6	27915110	27915111	1
Deletion	Chr4	31865661	31865662	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	20461577	20610789	2
Inversion	Chr4	20461586	20612868	2
Inversion	Chr4	24249817	24540300	OsKitaake04g156000
Inversion	Chr4	24251592	24889458	OsKitaake04g165800
Inversion	Chr4	24540312	24871779
Inversion	Chr11	28717241	28788981	OsKitaake11g235600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes