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Mutant Information

Mutant Name	FN1753-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1753-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12704941 C-A Hetero INTERGENIC
SBS Chr2 737890 T-C Homo INTERGENIC
SBS Chr2 1451845 A-G Hetero INTERGENIC
SBS Chr3 27863984 A-T Homo INTERGENIC
SBS Chr4 5949593 G-A Hetero INTRON
SBS Chr4 27608714 T-C Homo INTERGENIC
SBS Chr5 5317834 C-T Homo INTERGENIC
SBS Chr5 11545028 T-C Hetero INTRON
SBS Chr6 18822701 G-A Hetero INTERGENIC
SBS Chr6 26820574 C-A Hetero INTERGENIC
SBS Chr6 30851968 A-T Hetero INTERGENIC
SBS Chr6 30851972 G-A Hetero INTERGENIC
SBS Chr7 9964884 G-A Homo INTERGENIC
SBS Chr8 13645511 C-T Homo INTERGENIC
SBS Chr9 17733480 A-G Hetero INTERGENIC
SBS Chr10 10970017 G-A Hetero INTERGENIC
SBS Chr12 10514290 A-T Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5989184 5989210 26
Deletion Chr2 7947873 7947877 4
Deletion Chr6 13177019 13177021 2
Deletion Chr9 15818001 15818003 2
Deletion Chr5 16554425 16554430 5
Deletion Chr11 17717882 17718008 126
Deletion Chr7 17803610 17803684 74
Deletion Chr7 18105448 18105457 9
Deletion Chr4 20714064 20714065 1
Deletion Chr4 28562856 28562860 4
Deletion Chr11 29544587 29544589 2
Deletion Chr4 34323756 34323765 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7050583 7050586 2
Insertion Chr11 16709257 16709260 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1433533 1641684 OsKitaake12g021500
Inversion Chr12 1433537 1641701 OsKitaake12g021500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 15157087 Chr6 20452234
Translocation Chr9 16959663 Chr6 20489873 OsKitaake09g125700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12704941	C-A	Hetero	INTERGENIC
SBS	Chr2	737890	T-C	Homo	INTERGENIC
SBS	Chr2	1451845	A-G	Hetero	INTERGENIC
SBS	Chr3	27863984	A-T	Homo	INTERGENIC
SBS	Chr4	5949593	G-A	Hetero	INTRON
SBS	Chr4	27608714	T-C	Homo	INTERGENIC
SBS	Chr5	5317834	C-T	Homo	INTERGENIC
SBS	Chr5	11545028	T-C	Hetero	INTRON
SBS	Chr6	18822701	G-A	Hetero	INTERGENIC
SBS	Chr6	26820574	C-A	Hetero	INTERGENIC
SBS	Chr6	30851968	A-T	Hetero	INTERGENIC
SBS	Chr6	30851972	G-A	Hetero	INTERGENIC
SBS	Chr7	9964884	G-A	Homo	INTERGENIC
SBS	Chr8	13645511	C-T	Homo	INTERGENIC
SBS	Chr9	17733480	A-G	Hetero	INTERGENIC
SBS	Chr10	10970017	G-A	Hetero	INTERGENIC
SBS	Chr12	10514290	A-T	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5989184	5989210	26
Deletion	Chr2	7947873	7947877	4
Deletion	Chr6	13177019	13177021	2
Deletion	Chr9	15818001	15818003	2
Deletion	Chr5	16554425	16554430	5
Deletion	Chr11	17717882	17718008	126
Deletion	Chr7	17803610	17803684	74
Deletion	Chr7	18105448	18105457	9
Deletion	Chr4	20714064	20714065	1
Deletion	Chr4	28562856	28562860	4
Deletion	Chr11	29544587	29544589	2
Deletion	Chr4	34323756	34323765	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1433533	1641684	OsKitaake12g021500
Inversion	Chr12	1433537	1641701	OsKitaake12g021500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes