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Mutant Information

Mutant Name	FN1755-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1755-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31095373 A-G Hetero INTERGENIC
SBS Chr2 1905473 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g029100
SBS Chr2 3978033 G-T Homo INTERGENIC
SBS Chr2 11996186 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g136200
SBS Chr2 22912339 T-C Hetero INTERGENIC
SBS Chr3 1488205 A-G Hetero INTRON
SBS Chr3 1647408 C-A Hetero INTRON
SBS Chr3 16803565 T-A Hetero INTERGENIC
SBS Chr3 21764562 A-G Hetero INTERGENIC
SBS Chr3 29091973 A-C Homo INTERGENIC
SBS Chr4 8177064 A-T Hetero INTERGENIC
SBS Chr5 7768950 G-A Hetero INTRON
SBS Chr5 11432102 A-G Hetero INTERGENIC
SBS Chr5 16923517 A-T Hetero INTERGENIC
SBS Chr6 18580558 C-T Hetero INTERGENIC
SBS Chr6 27094888 A-C Homo INTERGENIC
SBS Chr7 1750915 G-T Hetero INTERGENIC
SBS Chr7 17492885 A-T Hetero INTERGENIC
SBS Chr8 7101867 G-T Homo INTERGENIC
SBS Chr8 20211116 G-A Hetero INTERGENIC
SBS Chr8 25566924 A-T Hetero INTERGENIC
SBS Chr8 27886832 G-T Hetero INTERGENIC
SBS Chr9 15265234 G-A Hetero INTERGENIC
SBS Chr10 2851846 G-A Hetero INTERGENIC
SBS Chr10 15212795 A-G Homo INTERGENIC
SBS Chr11 14193481 G-A Homo INTRON
SBS Chr11 29675717 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g245300
SBS Chr12 17047511 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2758095 2758101 6
Deletion Chr5 6089386 6089390 4
Deletion Chr2 6595955 6595958 3
Deletion Chr12 8919811 8919813 2
Deletion Chr12 9252749 9252760 11
Deletion Chr2 15123329 15123331 2
Deletion Chr7 21385876 21385877 1
Deletion Chr1 21766006 21766010 4
Deletion Chr6 22909583 22909584 1
Deletion Chr11 25551464 25551469 5
Deletion Chr3 26805401 26805404 3
Deletion Chr2 33144286 33144291 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 16448940 16448943 2
Insertion Chr12 13424403 13424405 1
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 25681892 25919775 OsKitaake11g207500
Inversion Chr11 25681901 25919775 OsKitaake11g207500

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 512750 Chr4 459422 OsKitaake06g004300
Translocation Chr6 512778 Chr4 454876 OsKitaake06g004300
Translocation Chr12 14856261 Chr3 275335 OsKitaake03g003700
Translocation Chr12 14856524 Chr3 275332 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31095373	A-G	Hetero	INTERGENIC
SBS	Chr2	1905473	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g029100
SBS	Chr2	3978033	G-T	Homo	INTERGENIC
SBS	Chr2	11996186	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g136200
SBS	Chr2	22912339	T-C	Hetero	INTERGENIC
SBS	Chr3	1488205	A-G	Hetero	INTRON
SBS	Chr3	1647408	C-A	Hetero	INTRON
SBS	Chr3	16803565	T-A	Hetero	INTERGENIC
SBS	Chr3	21764562	A-G	Hetero	INTERGENIC
SBS	Chr3	29091973	A-C	Homo	INTERGENIC
SBS	Chr4	8177064	A-T	Hetero	INTERGENIC
SBS	Chr5	7768950	G-A	Hetero	INTRON
SBS	Chr5	11432102	A-G	Hetero	INTERGENIC
SBS	Chr5	16923517	A-T	Hetero	INTERGENIC
SBS	Chr6	18580558	C-T	Hetero	INTERGENIC
SBS	Chr6	27094888	A-C	Homo	INTERGENIC
SBS	Chr7	1750915	G-T	Hetero	INTERGENIC
SBS	Chr7	17492885	A-T	Hetero	INTERGENIC
SBS	Chr8	7101867	G-T	Homo	INTERGENIC
SBS	Chr8	20211116	G-A	Hetero	INTERGENIC
SBS	Chr8	25566924	A-T	Hetero	INTERGENIC
SBS	Chr8	27886832	G-T	Hetero	INTERGENIC
SBS	Chr9	15265234	G-A	Hetero	INTERGENIC
SBS	Chr10	2851846	G-A	Hetero	INTERGENIC
SBS	Chr10	15212795	A-G	Homo	INTERGENIC
SBS	Chr11	14193481	G-A	Homo	INTRON
SBS	Chr11	29675717	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g245300
SBS	Chr12	17047511	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2758095	2758101	6
Deletion	Chr5	6089386	6089390	4
Deletion	Chr2	6595955	6595958	3
Deletion	Chr12	8919811	8919813	2
Deletion	Chr12	9252749	9252760	11
Deletion	Chr2	15123329	15123331	2
Deletion	Chr7	21385876	21385877	1
Deletion	Chr1	21766006	21766010	4
Deletion	Chr6	22909583	22909584	1
Deletion	Chr11	25551464	25551469	5
Deletion	Chr3	26805401	26805404	3
Deletion	Chr2	33144286	33144291	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25681892	25919775	OsKitaake11g207500
Inversion	Chr11	25681901	25919775	OsKitaake11g207500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes