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Mutant Information

Mutant Name	FN1757-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1757-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10830254 C-A Hetero STOP_GAINED OsKitaake01g133600
SBS Chr1 21735282 A-T Homo INTRON
SBS Chr2 6920846 C-A Homo INTERGENIC
SBS Chr2 6920847 G-A Homo INTERGENIC
SBS Chr2 20773765 G-T Homo INTRON
SBS Chr2 33155664 G-A Homo UTR_5_PRIME
SBS Chr3 12540329 T-A Homo INTERGENIC
SBS Chr3 16316052 T-C Hetero INTERGENIC
SBS Chr3 17425545 A-G Hetero INTERGENIC
SBS Chr3 17822805 G-C Hetero INTERGENIC
SBS Chr4 7407662 C-A Hetero INTERGENIC
SBS Chr4 28823379 A-T Hetero INTERGENIC
SBS Chr4 31733561 T-G Hetero INTRON
SBS Chr5 3809438 T-A Hetero INTRON
SBS Chr5 15259297 C-T Homo INTERGENIC
SBS Chr5 23643020 T-G Homo INTERGENIC
SBS Chr5 27327433 A-G Homo INTERGENIC
SBS Chr6 30036375 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g281300
SBS Chr7 19480271 C-T Hetero INTERGENIC
SBS Chr7 26292520 A-T Hetero START_GAINED
SBS Chr8 2672339 A-T Homo INTERGENIC
SBS Chr8 3466010 G-A Homo INTRON
SBS Chr9 10868967 C-T Homo INTERGENIC
SBS Chr10 3602870 C-T Homo UTR_5_PRIME
SBS Chr10 3602871 A-C Homo UTR_5_PRIME
SBS Chr11 25685890 A-G Homo INTERGENIC
SBS Chr12 4104211 C-T Hetero INTERGENIC
SBS Chr12 7588297 C-T Hetero INTERGENIC
SBS Chr12 9945528 T-A Hetero INTERGENIC
SBS Chr12 9945529 C-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4343513 4343514 1
Deletion Chr2 13742896 13742903 7
Deletion Chr1 18070001 18303000 232999 14
Deletion Chr2 37007281 37007282 1 OsKitaake02g397100

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4938269 4938272 2
Insertion Chr5 28646985 28646987 1
Insertion Chr6 16801760 16801763 2
Insertion Chr7 2795134 2795138 3
Insertion Chr2 13756014 13756016 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10830254	C-A	Hetero	STOP_GAINED	OsKitaake01g133600
SBS	Chr1	21735282	A-T	Homo	INTRON
SBS	Chr2	6920846	C-A	Homo	INTERGENIC
SBS	Chr2	6920847	G-A	Homo	INTERGENIC
SBS	Chr2	20773765	G-T	Homo	INTRON
SBS	Chr2	33155664	G-A	Homo	UTR_5_PRIME
SBS	Chr3	12540329	T-A	Homo	INTERGENIC
SBS	Chr3	16316052	T-C	Hetero	INTERGENIC
SBS	Chr3	17425545	A-G	Hetero	INTERGENIC
SBS	Chr3	17822805	G-C	Hetero	INTERGENIC
SBS	Chr4	7407662	C-A	Hetero	INTERGENIC
SBS	Chr4	28823379	A-T	Hetero	INTERGENIC
SBS	Chr4	31733561	T-G	Hetero	INTRON
SBS	Chr5	3809438	T-A	Hetero	INTRON
SBS	Chr5	15259297	C-T	Homo	INTERGENIC
SBS	Chr5	23643020	T-G	Homo	INTERGENIC
SBS	Chr5	27327433	A-G	Homo	INTERGENIC
SBS	Chr6	30036375	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g281300
SBS	Chr7	19480271	C-T	Hetero	INTERGENIC
SBS	Chr7	26292520	A-T	Hetero	START_GAINED
SBS	Chr8	2672339	A-T	Homo	INTERGENIC
SBS	Chr8	3466010	G-A	Homo	INTRON
SBS	Chr9	10868967	C-T	Homo	INTERGENIC
SBS	Chr10	3602870	C-T	Homo	UTR_5_PRIME
SBS	Chr10	3602871	A-C	Homo	UTR_5_PRIME
SBS	Chr11	25685890	A-G	Homo	INTERGENIC
SBS	Chr12	4104211	C-T	Hetero	INTERGENIC
SBS	Chr12	7588297	C-T	Hetero	INTERGENIC
SBS	Chr12	9945528	T-A	Hetero	INTERGENIC
SBS	Chr12	9945529	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4343513	4343514	1
Deletion	Chr2	13742896	13742903	7
Deletion	Chr1	18070001	18303000	232999	14
Deletion	Chr2	37007281	37007282	1	OsKitaake02g397100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes