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Mutant Information

Mutant Name	FN1758-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1758-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (46.67% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6159455 T-A Hetero INTERGENIC
SBS Chr1 33832303 A-C Hetero SYNONYMOUS_CODING
SBS Chr1 34033095 A-T Hetero INTRON
SBS Chr1 34033096 C-T Hetero INTRON
SBS Chr1 40007722 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 21130674 T-A Hetero INTERGENIC
SBS Chr4 2291160 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g014400
SBS Chr4 7891150 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g040700
SBS Chr4 12011981 C-A Hetero INTERGENIC
SBS Chr4 33175213 G-A Homo INTRON
SBS Chr5 27210077 A-G Hetero INTERGENIC
SBS Chr6 20123694 C-T Hetero UTR_5_PRIME
SBS Chr7 18505129 C-T Hetero INTERGENIC
SBS Chr8 13583677 C-T Hetero INTERGENIC
SBS Chr10 201946 G-A Hetero INTERGENIC
SBS Chr10 5433324 G-A Hetero INTERGENIC
SBS Chr10 8348951 G-A Hetero INTERGENIC
SBS Chr10 8739037 T-C Hetero INTERGENIC
SBS Chr10 20649164 C-T Homo INTERGENIC
SBS Chr11 16758323 T-C Hetero INTERGENIC
SBS Chr11 17613169 G-C Hetero INTERGENIC
SBS Chr11 29344349 C-T Hetero INTERGENIC
SBS Chr12 11602766 A-T Hetero INTERGENIC
SBS Chr12 18830165 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 761756 761761 5
Deletion Chr1 6507432 6507441 9
Deletion Chr4 7064602 7064608 6
Deletion Chr4 10825720 10825723 3
Deletion Chr6 13753022 13753024 2
Deletion Chr8 14803759 14803760 1
Deletion Chr9 22038709 22038716 7
Deletion Chr6 23486001 23498000 11999 2
Deletion Chr4 26505001 26526000 20999 OsKitaake04g190400
Deletion Chr2 28872915 28872921 6
Deletion Chr1 31551978 31551981 3
Deletion Chr1 32104962 32104966 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 20923901 20923904 2
Insertion Chr5 8019107 8019110 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16187384 16243783

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 27867067 Chr1 35880197 2
Translocation Chr7 27894506 Chr1 35880254 OsKitaake01g380200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6159455	T-A	Hetero	INTERGENIC
SBS	Chr1	33832303	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34033095	A-T	Hetero	INTRON
SBS	Chr1	34033096	C-T	Hetero	INTRON
SBS	Chr1	40007722	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	21130674	T-A	Hetero	INTERGENIC
SBS	Chr4	2291160	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g014400
SBS	Chr4	7891150	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g040700
SBS	Chr4	12011981	C-A	Hetero	INTERGENIC
SBS	Chr4	33175213	G-A	Homo	INTRON
SBS	Chr5	27210077	A-G	Hetero	INTERGENIC
SBS	Chr6	20123694	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	18505129	C-T	Hetero	INTERGENIC
SBS	Chr8	13583677	C-T	Hetero	INTERGENIC
SBS	Chr10	201946	G-A	Hetero	INTERGENIC
SBS	Chr10	5433324	G-A	Hetero	INTERGENIC
SBS	Chr10	8348951	G-A	Hetero	INTERGENIC
SBS	Chr10	8739037	T-C	Hetero	INTERGENIC
SBS	Chr10	20649164	C-T	Homo	INTERGENIC
SBS	Chr11	16758323	T-C	Hetero	INTERGENIC
SBS	Chr11	17613169	G-C	Hetero	INTERGENIC
SBS	Chr11	29344349	C-T	Hetero	INTERGENIC
SBS	Chr12	11602766	A-T	Hetero	INTERGENIC
SBS	Chr12	18830165	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	761756	761761	5
Deletion	Chr1	6507432	6507441	9
Deletion	Chr4	7064602	7064608	6
Deletion	Chr4	10825720	10825723	3
Deletion	Chr6	13753022	13753024	2
Deletion	Chr8	14803759	14803760	1
Deletion	Chr9	22038709	22038716	7
Deletion	Chr6	23486001	23498000	11999	2
Deletion	Chr4	26505001	26526000	20999	OsKitaake04g190400
Deletion	Chr2	28872915	28872921	6
Deletion	Chr1	31551978	31551981	3
Deletion	Chr1	32104962	32104966	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16187384	16243783

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes