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Mutant Information

Mutant Name	FN1759-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1759-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4465342 G-A Homo SYNONYMOUS_CODING
SBS Chr1 12201852 T-C Hetero INTERGENIC
SBS Chr1 22303805 G-C Hetero INTERGENIC
SBS Chr1 35045048 A-C Homo INTERGENIC
SBS Chr2 2882868 C-T Hetero INTRON
SBS Chr2 10004502 G-C Hetero INTERGENIC
SBS Chr2 24247476 A-C Homo INTERGENIC
SBS Chr2 29082585 A-C Hetero INTRON
SBS Chr3 18336527 C-T Hetero INTERGENIC
SBS Chr3 32031593 A-G Homo INTERGENIC
SBS Chr4 12032168 T-G Hetero INTERGENIC
SBS Chr4 14772361 A-C Homo INTERGENIC
SBS Chr5 12824613 G-C Homo INTERGENIC
SBS Chr6 17777692 G-T Hetero INTERGENIC
SBS Chr6 25306151 A-T Homo INTERGENIC
SBS Chr6 26950699 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g241000
SBS Chr6 26950700 G-A Homo SYNONYMOUS_CODING
SBS Chr7 11125089 G-A Homo INTERGENIC
SBS Chr7 13811364 G-C Hetero INTERGENIC
SBS Chr8 20465334 C-T Hetero INTERGENIC
SBS Chr10 10102441 C-T Homo INTERGENIC
SBS Chr10 10102442 C-T Homo INTERGENIC
SBS Chr10 20531435 T-C Homo INTERGENIC
SBS Chr10 23075389 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g194100
SBS Chr11 2464876 G-T Hetero INTERGENIC
SBS Chr11 9356101 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 11761317 G-T Hetero INTRON
SBS Chr12 26027942 T-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1255001 1275000 19999 2
Deletion Chr12 5246582 5246585 3
Deletion Chr3 7619483 7619484 1
Deletion Chr4 9254342 9254346 4
Deletion Chr1 14637144 14637146 2
Deletion Chr12 15998018 15998022 4
Deletion Chr4 16138438 16138446 8
Deletion Chr5 19219589 19219592 3 OsKitaake05g150600
Deletion Chr9 22283853 22283854 1
Deletion Chr1 23106001 23136000 29999 3
Deletion Chr4 28245001 28257000 11999 OsKitaake04g210200

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6930321 6930324 2
Insertion Chr1 25070757 25070760 2
Insertion Chr2 36329726 36329730 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4465342	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	12201852	T-C	Hetero	INTERGENIC
SBS	Chr1	22303805	G-C	Hetero	INTERGENIC
SBS	Chr1	35045048	A-C	Homo	INTERGENIC
SBS	Chr2	2882868	C-T	Hetero	INTRON
SBS	Chr2	10004502	G-C	Hetero	INTERGENIC
SBS	Chr2	24247476	A-C	Homo	INTERGENIC
SBS	Chr2	29082585	A-C	Hetero	INTRON
SBS	Chr3	18336527	C-T	Hetero	INTERGENIC
SBS	Chr3	32031593	A-G	Homo	INTERGENIC
SBS	Chr4	12032168	T-G	Hetero	INTERGENIC
SBS	Chr4	14772361	A-C	Homo	INTERGENIC
SBS	Chr5	12824613	G-C	Homo	INTERGENIC
SBS	Chr6	17777692	G-T	Hetero	INTERGENIC
SBS	Chr6	25306151	A-T	Homo	INTERGENIC
SBS	Chr6	26950699	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g241000
SBS	Chr6	26950700	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	11125089	G-A	Homo	INTERGENIC
SBS	Chr7	13811364	G-C	Hetero	INTERGENIC
SBS	Chr8	20465334	C-T	Hetero	INTERGENIC
SBS	Chr10	10102441	C-T	Homo	INTERGENIC
SBS	Chr10	10102442	C-T	Homo	INTERGENIC
SBS	Chr10	20531435	T-C	Homo	INTERGENIC
SBS	Chr10	23075389	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g194100
SBS	Chr11	2464876	G-T	Hetero	INTERGENIC
SBS	Chr11	9356101	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	11761317	G-T	Hetero	INTRON
SBS	Chr12	26027942	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1255001	1275000	19999	2
Deletion	Chr12	5246582	5246585	3
Deletion	Chr3	7619483	7619484	1
Deletion	Chr4	9254342	9254346	4
Deletion	Chr1	14637144	14637146	2
Deletion	Chr12	15998018	15998022	4
Deletion	Chr4	16138438	16138446	8
Deletion	Chr5	19219589	19219592	3	OsKitaake05g150600
Deletion	Chr9	22283853	22283854	1
Deletion	Chr1	23106001	23136000	29999	3
Deletion	Chr4	28245001	28257000	11999	OsKitaake04g210200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes