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Mutant Information

Mutant Name	FN1760-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1760-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 5583221 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g077100
SBS Chr2 21658408 A-C Hetero INTERGENIC
SBS Chr2 26502249 A-T Hetero INTERGENIC
SBS Chr2 33943802 T-C Hetero INTERGENIC
SBS Chr3 11075143 C-G Hetero INTERGENIC
SBS Chr3 13521307 C-T Hetero INTERGENIC
SBS Chr3 35800245 T-G Homo INTERGENIC
SBS Chr4 6079472 G-A Homo INTERGENIC
SBS Chr4 7193235 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g036400
SBS Chr4 8933239 A-G Homo INTERGENIC
SBS Chr4 24448860 T-C Hetero START_GAINED
SBS Chr4 33998157 A-G Hetero INTERGENIC
SBS Chr5 25466389 C-T Hetero INTERGENIC
SBS Chr6 7302103 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g094300
SBS Chr7 24665751 G-A Homo INTERGENIC
SBS Chr8 5181521 C-G Homo UTR_3_PRIME
SBS Chr8 13289766 T-A Hetero INTERGENIC
SBS Chr9 5435977 G-A Hetero INTERGENIC
SBS Chr9 6129239 A-G Hetero INTERGENIC
SBS Chr9 6169107 G-A Hetero INTERGENIC
SBS Chr9 10142047 G-A Hetero INTERGENIC
SBS Chr10 8119841 T-C Hetero INTERGENIC
SBS Chr11 18672098 G-C Hetero INTERGENIC
SBS Chr12 9306830 C-T Homo INTRON
SBS Chr12 21519915 A-T Hetero INTERGENIC
SBS Chr12 21519916 C-T Hetero INTERGENIC
SBS Chr12 26170253 A-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 6715754 6715755 1
Deletion Chr9 7146638 7146639 1 OsKitaake09g041600
Deletion Chr4 10125340 10125345 5
Deletion Chr1 12583418 12583422 4
Deletion Chr1 13081294 13081303 9
Deletion Chr9 13534559 13534561 2
Deletion Chr6 16597177 16597183 6
Deletion Chr3 17748028 17748030 2
Deletion Chr5 20716001 21027000 310999 38
Deletion Chr10 20865052 20865059 7
Deletion Chr5 21037001 21192000 154999 27
Deletion Chr2 21826303 21826307 4
Deletion Chr4 24363001 24405000 41999 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36946040 36946043 2
Insertion Chr5 28591634 28591637 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16517651 16598803

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 7955879 Chr1 10937284
Translocation Chr8 9783607 Chr1 10938129

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	5583221	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g077100
SBS	Chr2	21658408	A-C	Hetero	INTERGENIC
SBS	Chr2	26502249	A-T	Hetero	INTERGENIC
SBS	Chr2	33943802	T-C	Hetero	INTERGENIC
SBS	Chr3	11075143	C-G	Hetero	INTERGENIC
SBS	Chr3	13521307	C-T	Hetero	INTERGENIC
SBS	Chr3	35800245	T-G	Homo	INTERGENIC
SBS	Chr4	6079472	G-A	Homo	INTERGENIC
SBS	Chr4	7193235	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g036400
SBS	Chr4	8933239	A-G	Homo	INTERGENIC
SBS	Chr4	24448860	T-C	Hetero	START_GAINED
SBS	Chr4	33998157	A-G	Hetero	INTERGENIC
SBS	Chr5	25466389	C-T	Hetero	INTERGENIC
SBS	Chr6	7302103	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g094300
SBS	Chr7	24665751	G-A	Homo	INTERGENIC
SBS	Chr8	5181521	C-G	Homo	UTR_3_PRIME
SBS	Chr8	13289766	T-A	Hetero	INTERGENIC
SBS	Chr9	5435977	G-A	Hetero	INTERGENIC
SBS	Chr9	6129239	A-G	Hetero	INTERGENIC
SBS	Chr9	6169107	G-A	Hetero	INTERGENIC
SBS	Chr9	10142047	G-A	Hetero	INTERGENIC
SBS	Chr10	8119841	T-C	Hetero	INTERGENIC
SBS	Chr11	18672098	G-C	Hetero	INTERGENIC
SBS	Chr12	9306830	C-T	Homo	INTRON
SBS	Chr12	21519915	A-T	Hetero	INTERGENIC
SBS	Chr12	21519916	C-T	Hetero	INTERGENIC
SBS	Chr12	26170253	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	6715754	6715755	1
Deletion	Chr9	7146638	7146639	1	OsKitaake09g041600
Deletion	Chr4	10125340	10125345	5
Deletion	Chr1	12583418	12583422	4
Deletion	Chr1	13081294	13081303	9
Deletion	Chr9	13534559	13534561	2
Deletion	Chr6	16597177	16597183	6
Deletion	Chr3	17748028	17748030	2
Deletion	Chr5	20716001	21027000	310999	38
Deletion	Chr10	20865052	20865059	7
Deletion	Chr5	21037001	21192000	154999	27
Deletion	Chr2	21826303	21826307	4
Deletion	Chr4	24363001	24405000	41999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16517651	16598803

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes